Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi254g00041 ATGATGAGTAGTAGTGCAAGTTCAAGAAATAGGTCACCTTTTACACCAAATCAATGGCAAGAGCTTGAACAACAAGCCCTTGTTTTCAAATACATGGTTACAGGTACACCTATTCCTCCAGATCTTATCTTCTCCATCAAAAGAAGCTTGGACAGTTCTATATCTTCAAGAATCTTTCCACATCCTCCAATTGGGTGGGGATGTTTTGAAATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGTTCAAAGGAAGCATATCCAGACTCTAAGTACTGTGAAAGACACATGCACAGAGGTAGAAACCGTTCAAGAAAGCCTGTGGAACTAGTTGTGTCTTCTTCATCATCAACAACATCAACAAACACAAACACAATCTCTCTATCTCAATCTCAATCTCAACCTCAATCTCAACCTCAATCTCAAACCAATACCAGAAACCTCTCCTTGAACAACAGTTCCACCTTAACCTCACCTTCTTCTTTTCCTTTTCATGAACCTCAACAACAACAACAACACTTTTCTCAACCCTACCAAAACCCTTACTTCAATTATTCTCAGCAATCTATCACTGGCTCTAAACCTCTTGATCATTCTGAGTTTCAACCTCATCATGATGGTTCTACTACTCACCACCTCTTTCTGGATTCTGGATCTTATTCTCAGGATGAAAAAGACTATAGGCATGTGCAAGTTCAAGGGATAAGAGATGGAACTGTGGATGAAAGAACTTTCTTTCCAGAAGCTTCAGGTTCTTCTAGGAGTTATCATCATGATCCATACCAACAACAACAACAACTGAATTCCTTTAAGTCATCATCATATGCAAGCTCACAATTTCACAACATCAATGATGATAATCCAAGACAGCAACAGCAGCAACAACAAGAACAACACTGTTTTGTTTTAGGCACAGACTTCAAATCAACAAGGCCAACAACAAACAAGGACAAAGAAAGTGAGACAACTCAAAAACCTCTTCATCATTTCTTTGGAGAGTGGACACCAAAGAACACAGATTCTTGGCTAGATCTTGCTTCCAACTCCAGAATTCCAACAGATGAATGA 1104 0.3967 MMSSSASSRNRSPFTPNQWQELEQQALVFKYMVTGTPIPPDLIFSIKRSLDSSISSRIFPHPPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVELVVSSSSSTTSTNTNTISLSQSQSQPQSQPQSQTNTRNLSLNNSSTLTSPSSFPFHEPQQQQQHFSQPYQNPYFNYSQQSITGSKPLDHSEFQPHHDGSTTHHLFLDSGSYSQDEKDYRHVQVQGIRDGTVDERTFFPEASGSSRSYHHDPYQQQQQLNSFKSSSYASSQFHNINDDNPRQQQQQQQEQHCFVLGTDFKSTRPTTNKDKESETTQKPLHHFFGEWTPKNTDSWLDLASNSRIPTDE 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi254g00041 367 MobiDBLite consensus disorder prediction 250 367 - -
Vivi254g00041 367 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Vivi254g00041 367 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi254g00041 367 MobiDBLite consensus disorder prediction 258 322 - -
Vivi254g00041 367 Pfam QLQ 13 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi254g00041 367 MobiDBLite consensus disorder prediction 323 338 - -
Vivi254g00041 367 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi254g00041 367 MobiDBLite consensus disorder prediction 105 223 - -
Vivi254g00041 367 MobiDBLite consensus disorder prediction 352 367 - -
Vivi254g00041 367 PANTHER GROWTH-REGULATING FACTOR 5 11 355 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vivi254g00041 367 MobiDBLite consensus disorder prediction 120 208 - -
Vivi254g00041 367 Pfam WRC 79 121 IPR014977 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi254g00041 1 345 GRF Transcription Factor Family AT3G13960 41.045 7.18e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vivi254g00041 WRC 2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi254g00041 - - aprc:113851425 433.721