Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi254g00028 ATGATTATGGAACCAAACCCGACTTCAGATCACATTCTTGACTGGCTTGAAGGTTCGGTTTCGTTCTTTCCATCGTTCTTGGATGATCCGTATAACAGCGGTTACATCCAAGAGTATCCGTTATGGGATCAGAATCAAGATATAAGGAGCCAGTATCAAACTGATGTGATTATTGACTCTCCTAATGCAACAAACAGCGCGAACAATGTTGCTGCTGCTAGTACTACTACCACGAGCGCGACTTCCCTTGAGCCTAATAGTTCGAATAACGTAACGTTTTCTGATTTACCGAAGAAACGAAATGTTGATGATGAGTCGAGTCTCGAGAAACAATCACGAAGCCAGAAGAATAAGAGAGTCAAGAGGCGTGTGATGAATGAAGGTGATAATGGAGATGCGGGTCTTGAAGGGACAGTGGTTAGAAAATCTGGTGGGAATAAGAAAGGTGCTGCTAAGGCTAATGGAAGTAACTGTAACAATGGAAACAATAAGGATGGTAGATGGGCTGAGCAGTTGCTGAACCCTTGTGCTGCAGCCATAACCGGAGGAAACCTGAATCGCGTGCAACATCTTTTATATGTTCTCCATGAGCTAGCTTCACCTACCGGTGATGCTAACCACCGGCTTGCGGCGCATGGTCTCCGAGCGTTGACACACCATCTGTCTTCATCTTCGTCGTCTACCTCTTCAGGGACTATAACTTTTGCATCAACGGAACCACGATTCTTCCAAAAGTCGTTATTGAAGTTCTATGAGGTTAGTCCTTGGTTTTCCTTTCCTAATAACATAGCAAATGCTTCCATCCTTCAAGTTCTAGCTGAAGAGCCGAATGATTTGCGCGCTCTTCACATCCTCGACATTGGAGTCTCTCATGGTGTGCAATGGCCGACTTTTCTAGAGGCCTTGAGTCGTCGACCTGGTGGACCTCCTCCTCTGGTTCGCCTCACTGTGGTTACTGCTTCGTCGACTGAAAACAACCAAAACATGGAGACACCATTTTCAATAGGTCCATGTGGTGATAACTTCTCTTCGAGACTTCTAGGTTATGCCAAGTCCATAAATGTCAACCTCCAGATAAACAAGCTTGATAATATTCCATTGCATACATTAACTGCTAAAATTGTTGACGCCACCCCCGATGAATCCTTAATCGTCTGCGCTCAATTCAGGTTGCACCACTTGAATCACAACAATCCTGATGAAAGAAGTGAGTTTCTTAAGGTGTTGAGAGACATGGAGCCTAAAGGGGTGATATTGAATGAGAACAACATGGAGTGTTGCTGCAGTAGCTGTGGCGATTTCGCCACTAGATTCTCTCAAAGAGTGGACTACTTATGGAAGTTTTTAGATTCAACCAGTTCAGCATTCAAAGGTCGCGAGAATGATGAAAGGAGAATGATGGAAGGCGAGGCTTCGAAAGCATTGACAAACCAGCGTGAGATGAACGAAAGAAGAGAAAAATGGAGCGAAAGAATGAAAGAGGCAGGGTTTGCAGAGGAAATATTTGGAGAGGATGCGATTGACGGAGGTCGAGCTTTGTTAAGAAAGTATGATAGTAATTGGGAGATGAAACTCGAAGAAGAGAACAATACAAGTGTGGGACTATGGTGGAAGGGGCAACCTGTTTCTTTCTGTTCTCTGTGGAAATTGGATAAACAACATTGA 1665 0.442 MIMEPNPTSDHILDWLEGSVSFFPSFLDDPYNSGYIQEYPLWDQNQDIRSQYQTDVIIDSPNATNSANNVAAASTTTTSATSLEPNSSNNVTFSDLPKKRNVDDESSLEKQSRSQKNKRVKRRVMNEGDNGDAGLEGTVVRKSGGNKKGAAKANGSNCNNGNNKDGRWAEQLLNPCAAAITGGNLNRVQHLLYVLHELASPTGDANHRLAAHGLRALTHHLSSSSSSTSSGTITFASTEPRFFQKSLLKFYEVSPWFSFPNNIANASILQVLAEEPNDLRALHILDIGVSHGVQWPTFLEALSRRPGGPPPLVRLTVVTASSTENNQNMETPFSIGPCGDNFSSRLLGYAKSINVNLQINKLDNIPLHTLTAKIVDATPDESLIVCAQFRLHHLNHNNPDERSEFLKVLRDMEPKGVILNENNMECCCSSCGDFATRFSQRVDYLWKFLDSTSSAFKGRENDERRMMEGEASKALTNQREMNERREKWSERMKEAGFAEEIFGEDAIDGGRALLRKYDSNWEMKLEEENNTSVGLWWKGQPVSFCSLWKLDKQH 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi254g00028 554 Pfam GRAS domain family 170 549 IPR005202 -
Vivi254g00028 554 ProSiteProfiles GRAS family profile. 160 549 IPR005202 -
Vivi254g00028 554 MobiDBLite consensus disorder prediction 97 114 - -
Vivi254g00028 554 MobiDBLite consensus disorder prediction 76 96 - -
Vivi254g00028 554 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 124 537 IPR005202 -
Vivi254g00028 554 MobiDBLite consensus disorder prediction 76 162 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi254g00028 1 549 GRAS Transcription Factor Family AT3G13840 50.000 8.20e-175 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi254g00028 GRAS 1e-76 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi254g00028 - - mtr:11434050 883.248