Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi254g00027 ATGTCCTCTCAAGACCAAGTATTAGTTTCCTTTCTCTCTCACATAGCCCTATCCTTCGACGGCGCCGTTTTAGGTTTATCCCTAGCCTACGTCGCCGTCCGCACCATTCAAAAATTCACCCTCACCTCCGCCGCTCTCCGGAAGATCACCCACGCTCCTTCCGTCTCCGTCTCCGACCTACGCTCGCTCCTCGAAGACAACGTCTCGGAGGATGACGGAGGCTCCGGCGATGGGAGAATTGTGATTGTCCGTGGTACTGTTGATGCTAAGTCCGCTGTGGATGGGAGTTGGAAAGCGTTGTGGCCTGGTGTTTTGATTTCTCGGGAGTCTGGTGATAAAGGGGTTGTTCTTCAAAGAACTCAAACGTGTATATACAGCGAATGGAAAGGCTTATTTGGATGGACTTCTGATCTTCGAGCCGTATTTATAAAATCTCGGAGACAACGAGAGTCCACATCCTTAAGAAAGGTCCCTTTTGTTCTCATTGATGTTGGACGACAGTCAAATACCGAGTATGTTGTTGTCAACATGGATGGATCAACACATCCCTTACCTCTTACAACAGTTTATCACAAATTGCAACCTATAAATCCTCCTTATACTCTCTTGCAAGCATTTTTCGGGCATGAATATATGGTTGGACTGCTTGATGAAGAGAAAATTCTTCCCTTGGGGAAGGATATCAATGCTGTAGGCCTTTGCAGTTTAAGAAATGGAATTGCTGAAATCAAGTCTTGTGAAGATCTTCCGTATTTTCTGTCTGACTTGAGTAAAAATCAGATGGTTGTAGATCTTTCCTTCAAAACAAGACTACTGTTTTGGAGTGGCATTGTTCTTGGTTCAATGTCAGTTGGGATCATTGGCTATGCAGTTATGAGGAACTGGAATAGATGGAAACAATGGAAGCAACGAAGGCAGCTCCAACAACAAAGGCAAACAATCACTGAAGTTGATTCTCAGCTAGATGACGACGATATTGAAAATGTTCCAGATGGACAATTATGCGTTATATGTCTGATGAGGAGAAGGCGTTCTGTTTTTATTCCATGTGGGCATCTTGTATGTTGCCAAGGGTGTGCTATATCAGTTGAAAGTGAAGTGGCACCCAAGTGTCCAGTTTGTCGTCAGGAGGTTCGGGATTCAGTTCGAATCTTCGAATCTTGA 1164 0.4459 MSSQDQVLVSFLSHIALSFDGAVLGLSLAYVAVRTIQKFTLTSAALRKITHAPSVSVSDLRSLLEDNVSEDDGGSGDGRIVIVRGTVDAKSAVDGSWKALWPGVLISRESGDKGVVLQRTQTCIYSEWKGLFGWTSDLRAVFIKSRRQRESTSLRKVPFVLIDVGRQSNTEYVVVNMDGSTHPLPLTTVYHKLQPINPPYTLLQAFFGHEYMVGLLDEEKILPLGKDINAVGLCSLRNGIAEIKSCEDLPYFLSDLSKNQMVVDLSFKTRLLFWSGIVLGSMSVGIIGYAVMRNWNRWKQWKQRRQLQQQRQTITEVDSQLDDDDIENVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVESEVAPKCPVCRQEVRDSVRIFES 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi254g00027 387 CDD RING-HC_SPL2-like 330 376 - -
Vivi254g00027 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 387 IPR013083 -
Vivi254g00027 387 SMART ring_2 335 374 IPR001841 -
Vivi254g00027 387 SUPERFAMILY RING/U-box 320 380 - -
Vivi254g00027 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 387 IPR044247 GO:0004842
Vivi254g00027 387 ProSiteProfiles Zinc finger RING-type profile. 335 375 IPR001841 -
Vivi254g00027 387 Pfam E3 Ubiquitin ligase 142 285 IPR022170 GO:0004842|GO:0006996|GO:0016567
Vivi254g00027 387 Pfam Zinc finger, C3HC4 type (RING finger) 333 380 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi254g00027 332 384 C3H Transcription Factor Family AT3G06140 35.849 4.39e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi254g00027 K15688 - gmx:100800058 587.8