Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi254g00020 ATGCCTTCAAAGAAAAAAAGTCAATGGAAAACCTTAGTACTTGGTTGTTTCAAAGACAAAAACCTTACCTTGGAATCACCAAAACTTGTTTCAAAAAAGCAAGGTTCAAGTAGAATCTCTCTTTCTGATTTAAGTGATTATTCATCTCCTTCTGTCATTAGTGATTTATCCAATTCATTAGTTGGAAATGTTCAAATCTTCACTTGCAAAGAACTCAAAGAGATCACAAACAACTTCCACAAATCAAATTTTCTTGGTGAAGGTGGATTTGGAAAAGTTTACAAAGGTTTCATTGATGATAAACTTAGACCTGCTCTTGTTCTTCCTCAAGCTGTTGCTGTTAAAGCCTTGAATTTGGATGGAAAACAAGGTCATAGAGAGTGGTTGGCTGAAGTTCTATTTTTGGGGCAGTTGAAGCATCGCAATCTTGTTAACTTAATTGGATATTGCTATGAAGATGAGCATAGACTTCTTGTCTATGAATATATGGAAAGAGGAAGTTTAGAAGAAAAACTTTTCAAAGGTTATTTAGCAACTTTGCCTTGGTTAACAAGAATCAAAATAGCACTTGGTGCTGCTAAAGGACTAGCTTTTCTTCATGAAGAAGAGAAACCTGTTATATATAGAGATGTTAAAGCCTCAAACATTCTATTGGATGCTGATTTCGTTGCTAAGTTATCGGATTTTGGTTTAGCAATCGATGGACCAGATAAAGATCAAACTCATATCACGACTCGTGTGATGGGTACACATGGTTACGCCGCTCCTGAATATATCAATACAGGTCGTTTGACGACGATGAGTGATGTATACAGCTTTGGAGTCGTTCTCTTAGAGCTACTTACCGGAAAGAAATCAGTGGACAAAAAAAGACCATCAAGAGAACAAGATTTAGTAGAATGGGCAAGGCCATTATTGAAAGACTCACACAAACTCGAAAGAATAATCGATTCGAGACTCGAGGATCAATACTCGATCGAAGGAGCAAGAAAACTAGCATCCTTAACATACCAATGTCTAAGTCATCATGACAAAAGTAGACCAGCAATGAGAACCGTTGTTAAAACCTTAGAGTCTCTCATGAAACTCAATGACATTCCAATTGGTCATTTTGTTTATGTGGTTCCAAGTGAGGTGACAAATAGTGAAGTGTCACTAAATGTCAATGACAAAAGTGTTGTGAAAAATAAGGTTGAAGAAAAGGAAGAGGATAGAAGAATTCGTCGAAAGAGTCGTAGTAGCCGACGAAAGGTTAAGGCGATGATGAGGTCTGGTTCTGTTTACTCTGATACTTCTCTGTATAAGACTCTTGGAACTAGTTTGTATTCACCTAAGCAATGCAAGGAGAAGGAACAAGAAGTGGAAATATGA 1371 0.3698 MPSKKKSQWKTLVLGCFKDKNLTLESPKLVSKKQGSSRISLSDLSDYSSPSVISDLSNSLVGNVQIFTCKELKEITNNFHKSNFLGEGGFGKVYKGFIDDKLRPALVLPQAVAVKALNLDGKQGHREWLAEVLFLGQLKHRNLVNLIGYCYEDEHRLLVYEYMERGSLEEKLFKGYLATLPWLTRIKIALGAAKGLAFLHEEEKPVIYRDVKASNILLDADFVAKLSDFGLAIDGPDKDQTHITTRVMGTHGYAAPEYINTGRLTTMSDVYSFGVVLLELLTGKKSVDKKRPSREQDLVEWARPLLKDSHKLERIIDSRLEDQYSIEGARKLASLTYQCLSHHDKSRPAMRTVVKTLESLMKLNDIPIGHFVYVVPSEVTNSEVSLNVNDKSVVKNKVEEKEEDRRIRRKSRSSRRKVKAMMRSGSVYSDTSLYKTLGTSLYSPKQCKEKEQEVEI 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi254g00020 456 SMART serkin_6 79 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi254g00020 456 SUPERFAMILY Protein kinase-like (PK-like) 60 358 IPR011009 -
Vivi254g00020 456 Gene3D Phosphorylase Kinase; domain 1 52 162 - -
Vivi254g00020 456 Pfam Protein tyrosine and serine/threonine kinase 82 357 IPR001245 GO:0004672|GO:0006468
Vivi254g00020 456 ProSitePatterns Protein kinases ATP-binding region signature. 85 115 IPR017441 GO:0005524
Vivi254g00020 456 ProSiteProfiles Protein kinase domain profile. 79 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi254g00020 456 MobiDBLite consensus disorder prediction 404 424 - -
Vivi254g00020 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Vivi254g00020 456 FunFam Serine/threonine-protein kinase BIK1 48 162 - -
Vivi254g00020 456 CDD STKc_IRAK 85 360 - -
Vivi254g00020 456 Gene3D Transferase(Phosphotransferase) domain 1 163 367 - -
Vivi254g00020 456 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 163 366 - -
Vivi254g00020 456 PANTHER OS01G0588500 PROTEIN-RELATED 42 360 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi254g00020 64 407 Glycoside Hydrolase AT3G07070 46.398 1.12e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi254g00020 PK_Tyr_Ser-Thr 8.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi254g00020 - - gmx:100790454 624.394