Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi253g00001 ATGAGGAGGAATTGCAACTTAGAACTCTGCCTTTTTCCTCAATACGTTTCTGATAGCACTCACAATCAAAACAATCACATGTTTGAAGAAGAAAAAGATAGTGATAAGAGTTCAATGCAAAACCAGCAACAGCCGCTGACTATTTTCTACGATGGCAAGATGTGTGTTATTGATGTCACAGAGTTTCAGGCCAAATCAATCTTAATGATGGCAGATAGAAAAGTGCAAGAAACAGTAATGACACCAGAGTCAAAGGCATCAACACCAACAATTGTACAATCTCCACATCAATTGTATAGCCCTGGACCTGCTCCTGCTCTTTCAATGAGAACATCTTTGCAGCGGTTTCTGCAAAAGAGAAAAAATAGGATTCAACAAGCTTCTCCATACAATCATTAG 399 0.3885 MRRNCNLELCLFPQYVSDSTHNQNNHMFEEEKDSDKSSMQNQQQPLTIFYDGKMCVIDVTEFQAKSILMMADRKVQETVMTPESKASTPTIVQSPHQLYSPGPAPALSMRTSLQRFLQKRKNRIQQASPYNH 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi253g00001 132 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 27 131 IPR040390 -
Vivi253g00001 132 SMART tify_2 39 73 IPR010399 -
Vivi253g00001 132 MobiDBLite consensus disorder prediction 80 97 - -
Vivi253g00001 132 Pfam Jas motif 110 130 IPR018467 -
Vivi253g00001 132 Pfam tify domain 42 71 IPR010399 -
Vivi253g00001 132 MobiDBLite consensus disorder prediction 80 105 - -
Vivi253g00001 132 ProSiteProfiles Tify domain profile. 39 73 IPR010399 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi253g00001 1 130 Tify Gene Family AT1G30135 40.909 1.92e-20 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vivi253g00001 tify 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi253g00001 - - vvo:131641562 189.889