Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi250g00011 ATGGCTAGTGAAATTCCTCTGGTGGAACCAATCCACTTCATACTTACTCAAAGCTTTCATCATCAAAAATTTATGATGCCATGTAAGTTTGTGAAGAAATATGGAAAAAGTTTACCGAAAGATATTTATCTAAACACTCCAAATGGTGAAAAATGGAAAATATATTTGGTAAAAAGTGATGGCAAAATATGGTTTGGAAGTGGTTGGAAAGAATTTGCAAAGTTCCATTCGCTATCTTATTACCATCTTCTAGTTTTCAGATATGAAAGCACTTCGAGTTTTGAGGTACAAATCTTTGATAAGACTGCTTCTGAGATAAACTACCCTCTTAAAAGAGTTGAAGCTGAAGAGGTTTCTAATAGTAAAGAAGATTGTAGAGAAAATCAAAAGAGAAAAGCTTTCTCCTCCTTTGAATATGGAAGCAGCAGCAGTTGTGTTAAAGTCGGGAAATCGCAAAATCATATTGACAAAAAACGTAAAGGAAAACCGGTAACTATTGCTGAGAAAAATACAACTCTTGAAAGAGCCAAAGAGGTCAAAACAAGTAATCCATACTTTGTTCTTGTCATGGGTGCATCATACGTTGAGCATCATTTTCTTTTGACTATACCATGTGATTTTGGTAAGAGACACTTTGATTTGGATAAGAAGAAAGGAGATATTCATTTTCAGGTGTTGGATCATGGAATAGTTTGGCATGCAAAGTACACAATTAGGATGAGCACTACAGGACTAAAATTTGAACTCTCAAGGAAATGGAGGGAATTTGTAAAAGATAATAACTTGAAAGTTGGTGATGTTTGCAACTTTGAGCTCATTCATCAAACTAATATGACTTTTAAAGTTCACATCTTTAGAGCAACAGATGAAGTCAGCACTAATTGTTCAACTTCTCAAAGTAGGTTTAATTATTAA 915 0.3388 MASEIPLVEPIHFILTQSFHHQKFMMPCKFVKKYGKSLPKDIYLNTPNGEKWKIYLVKSDGKIWFGSGWKEFAKFHSLSYYHLLVFRYESTSSFEVQIFDKTASEINYPLKRVEAEEVSNSKEDCRENQKRKAFSSFEYGSSSSCVKVGKSQNHIDKKRKGKPVTIAEKNTTLERAKEVKTSNPYFVLVMGASYVEHHFLLTIPCDFGKRHFDLDKKKGDIHFQVLDHGIVWHAKYTIRMSTTGLKFELSRKWREFVKDNNLKVGDVCNFELIHQTNMTFKVHIFRATDEVSTNCSTSQSRFNY 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi250g00011 304 Pfam B3 DNA binding domain 18 101 IPR003340 GO:0003677
Vivi250g00011 304 Pfam B3 DNA binding domain 186 287 IPR003340 GO:0003677
Vivi250g00011 304 CDD B3_DNA 14 100 IPR003340 GO:0003677
Vivi250g00011 304 SUPERFAMILY DNA-binding pseudobarrel domain 13 109 IPR015300 -
Vivi250g00011 304 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Vivi250g00011 304 PANTHER B3 DOMAIN-CONTAINING 19 282 - -
Vivi250g00011 304 ProSiteProfiles B3 DNA-binding domain profile. 186 288 IPR003340 GO:0003677
Vivi250g00011 304 SUPERFAMILY DNA-binding pseudobarrel domain 181 287 IPR015300 -
Vivi250g00011 304 CDD B3_DNA 184 286 IPR003340 GO:0003677
Vivi250g00011 304 SMART B3_2 186 288 IPR003340 GO:0003677
Vivi250g00011 304 SMART B3_2 11 102 IPR003340 GO:0003677
Vivi250g00011 304 Gene3D - 163 291 IPR015300 -
Vivi250g00011 304 Gene3D - 10 103 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi250g00011 11 146 B3 DNA Binding Superfamily AT1G49475 35.294 8.00e-21 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi250g00011 B3 6.1e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi250g00011 - - vvo:131627623 616.305