Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi249g00007 ATGGACGACATTGAAGTTCCACACTTTTTCATTTGCCCAATCTCTCTCCAAATCATGAAAGATCCAGTTACTGCTATAACAGGCATAACCTACGATCGAGACAGCATCGAACATTGGTTACTCCGAAACAAAAACACAACATGTCCGGTCACAAAACAACCTCTTCCTCTAGATTCTGATTTAACACCGAATCATACACTCCGTCGATTGATTCAATCATGGTGCACGCAGAATGCTTCGCTCGGTGTCGATAGGATTCCTACACCGAAGCCGCCTCTCACGAAAGCTCATGTCGAGAAACTTCTCAAAGGAATGAAAGATCCTAAAGTTCAGCTCAAGAGTTTAATGCAGTTGGAGTTACTTGCTGCGGAGAATGAGAGGAATAAGAAGTGTTTGTTGGAAAACGGTGTCCCGAAAGCGATGATCATGTTCGTGTATGATTGTTATAAAAAAAGCGAAATCGTGGAAGGAATCGAAGAAGCTCTTAGTTTTTTACAATTTGTTAAGCTTCCAAACGACAAAGCTAAGAGTCTTTTATCAGAAAACAATGAAATATTAGATTGTTTAACATGGATATTAGATTTACCTTCTGAAATGAAGAACTCGGTAGCTGTGAAATCTCATGCGGTTTTGGTGCTTAAAAGATTCATCAACAACTGTGATTCCATTGTTCTAGAGAGATTAAAACCAGACTTTTTCAAAAGCGTTGTAAAATCTTTAAAAACCGGTGTAATAACTCAACAAGGTTTATGTGCAGCTTTACATGTTTTACTATGTTGTTGTCCTTTGGGAAGAAACAGGTTAATGATGGTTGAAGCTGGTGCAGTTAATGAACTGATAGAGATTGAATTGATGTCGATACCAGAGAAGCGAATCACGGAGCTAACTTTCGGTATTTTGTTTCATTTGTGTTCTTGTGCTAATGGGAGGTTTCAGCTTTTGAGTCATGAAGGTTCGATTGCGGTGTTGACAGAGAGAATCTTGAAGGGTTCAATGGCGGTTGATGATAGAGCGGTGTTTATACTTTCTTTGATAAGTAAATTTTCGGCTACTAAGACGGTTTTGGAAGAGATGTTAAAAGTTGGAACTGTTTCTAAGCTTTTTATTTTGCTTCAAGCTGATCATGCTAAGTATTTGAAGGATAAAGTTATGGAAATATTTAAGGCTCATTCTGAGGTTTGGAAGAATTCTCCTTGCTTTCCTCAAGATTCTTGTTATGCTAGTTTGCATAGATGA 1236 0.3819 MDDIEVPHFFICPISLQIMKDPVTAITGITYDRDSIEHWLLRNKNTTCPVTKQPLPLDSDLTPNHTLRRLIQSWCTQNASLGVDRIPTPKPPLTKAHVEKLLKGMKDPKVQLKSLMQLELLAAENERNKKCLLENGVPKAMIMFVYDCYKKSEIVEGIEEALSFLQFVKLPNDKAKSLLSENNEILDCLTWILDLPSEMKNSVAVKSHAVLVLKRFINNCDSIVLERLKPDFFKSVVKSLKTGVITQQGLCAALHVLLCCCPLGRNRLMMVEAGAVNELIEIELMSIPEKRITELTFGILFHLCSCANGRFQLLSHEGSIAVLTERILKGSMAVDDRAVFILSLISKFSATKTVLEEMLKVGTVSKLFILLQADHAKYLKDKVMEIFKAHSEVWKNSPCFPQDSCYASLHR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi249g00007 411 Coils Coil 115 135 - -
Vivi249g00007 411 SUPERFAMILY ARM repeat 99 377 IPR016024 -
Vivi249g00007 411 SUPERFAMILY RING/U-box 4 82 - -
Vivi249g00007 411 PANTHER WDSAM1 PROTEIN 3 401 IPR045185 GO:0061630
Vivi249g00007 411 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Vivi249g00007 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Vivi249g00007 411 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Vivi249g00007 411 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Vivi249g00007 411 Gene3D - 93 398 IPR011989 -
Vivi249g00007 411 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Vivi249g00007 411 CDD RING-Ubox_WDSUB1-like 7 64 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi249g00007 2 400 U-box Gene Family AT3G11840 41.723 9.91e-113 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi249g00007 - - lja:Lj0g3v0014579.1 552.747