LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi249g00001	ATGAATCAACAGATCGATGTTTCTCCATTTTTTCTATGCCCTATTTCACTTCAACTCATGAATGATCCTGTTACTGTCTCAACAGGAATAACCTACGACAGACAATCCATCGAAAAATGGCTCTTTTCGTCCAAAAACAATACATGTCCTGTCACAAAACAACAACTCTTACATGATCATCAAAATCACATTATTCTCACACCGAACCACACTCTTCGTAGACTCATCCAAGCATGGTGCACCATTAACTCTTCCTATGGCATCCAAAGGATTCCAACTCCAAAACCTCCAACAACAAAAACCCTCATAGAAAAACAACTCAAAGAAGCTTCTGATTCTTCAGATTCCCCTCACTTGCTTATTCAATCTCTTAGAAAGCTCAAAACAATAGCTTCCGAGAGCGAAACGAATCGACGGTGTATTGAATCTGCCGGTGCTGTAGAGTTCTTAGCATCAATAGTAACAAAAAACAACACAAGCTGTTCATCTTCATGTTCAACAGCAGAATTATCCGAAACCACCATTCTTGATGATGATGATATGGAAGGATTTGCGTTAGACTTTAATATTGGTGCAGATGATGAAGCTATAAACATCCTTTACAATCTTCATTTAACAGAACAAGGTTTGAAAACTCTCTTAAACTTCAAAAATGGAGAATTTTTAGACTCTTTAATGAGATTACTGCAAAAGGCTAACTACGACTCAAGAACATACACAGTTTTTCTGTTGAAATCTATGTCAAAGGTTGCTGATCCATCAAAACTAGCCAATCTAAAGTCCGAGTTTTTCGTGGAATTAGTTCAGCTTCTCAAAGATCAGATATCAAAAAAGGCATCAAAAGCAACACTACAAACATTGATTCAGCTTGTTGAATTTGGAAGAAATAGAATGAGAGCAGTGGAATCCGGCTGTGTTCATGTTTTGATAGAACTTCTTCTTGATTGCAAAGAAAGAAAACCACGTGAGATGATTTTGGTGCTCTTGGAGATGTTATGTCAAAGTGCTGATGGAAGATATGAACTTTTAAGCCATGGATGTGGTTTAGCTATTGTTTCAAAGAAGATTTTGAGGATTTCAACAATGGCTAATGATAGAGCAGTGAGGATTCTTCTATCTGTTGCAAGATTCTCTGCAACACATATAGTTGTTCAAGAAATGCTGCAAATAGGTGTTGTTGCAAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAGGCTAAGGAGAAAGCAAGAGAGATTCTTAAATTGCATGCAAACTCTTGGAGGAAGTCTCATTGTGTACCTACTAATTTACTTGCTTCTTATCCATCATCAAGTGCTTGA	1329	0.3702	MNQQIDVSPFFLCPISLQLMNDPVTVSTGITYDRQSIEKWLFSSKNNTCPVTKQQLLHDHQNHIILTPNHTLRRLIQAWCTINSSYGIQRIPTPKPPTTKTLIEKQLKEASDSSDSPHLLIQSLRKLKTIASESETNRRCIESAGAVEFLASIVTKNNTSCSSSCSTAELSETTILDDDDMEGFALDFNIGADDEAINILYNLHLTEQGLKTLLNFKNGEFLDSLMRLLQKANYDSRTYTVFLLKSMSKVADPSKLANLKSEFFVELVQLLKDQISKKASKATLQTLIQLVEFGRNRMRAVESGCVHVLIELLLDCKERKPREMILVLLEMLCQSADGRYELLSHGCGLAIVSKKILRISTMANDRAVRILLSVARFSATHIVVQEMLQIGVVAKLCLVLQVDSGNKAKEKAREILKLHANSWRKSHCVPTNLLASYPSSSA	442

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi249g00001	442	Gene3D	-	99	427	IPR011989	-
	Vivi249g00001	442	PANTHER	WDSAM1 PROTEIN	3	430	IPR045185	GO:0061630
	Vivi249g00001	442	SUPERFAMILY	ARM repeat	72	401	IPR016024	-
	Vivi249g00001	442	SUPERFAMILY	RING/U-box	5	88	-	-
	Vivi249g00001	442	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1	89	IPR013083	-
	Vivi249g00001	442	ProSiteProfiles	U-box domain profile.	6	86	IPR003613	GO:0004842\|GO:0016567
	Vivi249g00001	442	SMART	Ubox_2	10	79	IPR003613	GO:0004842\|GO:0016567
	Vivi249g00001	442	Pfam	U-box domain	8	83	IPR003613	GO:0004842\|GO:0016567
	Vivi249g00001	442	CDD	RING-Ubox_PUB	9	59	IPR045210	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi249g00001	1	439	U-box Gene Family	AT3G52450	52.477	4.40e-156	447

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi249g00001	-		-	tpra:123902305	726.087