Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi244g00019 ATGGAAAAAGGAAGCAGTAGCAGGAAGAACAACAACCAGAATCAACAAGATCACGATTTAGAGCTAGAGAAAGTTCGCTTAATCAGTCTAGCTCTCGAGTTCGGTTTCGATGAACAATCCGCTAACCAATGTTTCGACCGTCTCGTCTCTCTCTACGGCGATGACGGTCGTGATTTCATCACCGTTGAGCATTGCGGCGATGATTTTCTTACTGCTTTGGCGGAATCAGTGCAAGACACGGAGGAATGGGATGATTTACGCGAAATGGAATCGCAGGCTGTTGGAACTTTGAATCACGTGCTTGAAGAGCGTTTTTCCCCGTGCGGTGAGGGTTCTAAGTCTTTCGTTGATGTTATTGACGATTCGCCTCAGAAAGGGCGGAGCAAATTTGTTGAATTGGGTTCAAGTGATGAGGAGGATACAAGGGGTAATTCTGTATTTTCGGGTCAACATACTCGAAACTCGATGGATGGCAGAAGTTCCATCACTCAAGGCTCAGTTTCATCAACCTCCAGAAAAGTACAATCCTCCTTTGCTTCAAAGGATAGAACTAGTACTCTCACTTATGAAGAATTACAGGCGCTAGATGATATTGAATTGGCAAATGTTGTTATCTTTGGTAATAAAACACTCCGACCGTTGCAGCATCAAGCATGTGAAGCAACTTTGGCAAAACAAGATTCTTTTATTCTTATGCCTACTGGAGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACCCTTCAACCAGGAGTTACAGTAGTTATATCTCCCTTACTTTCACTCATTCAAGATCAGATAATAACACTTAACCTCAAATTTGGAATACCTGCTACTTTTTTAAATTCACAACAAAATGCTTCCCAAGCCGCAGCTGTCCTCCAAGAGCTAAGAAAAGACAAGCCTACGTGCAAGCTCTTGTATGTGACACCGGAGAGAATTGCGGGAAACCAAACATTTCTTGGGATTCTAAAATGCATGAATCAGAAGGGACAGCTGGCAGGTTTTGTTGTTGATGAGGCACACTGTGTTAGCCAGTGGGGACATGATTTCCGGCCTGATTATCGCGCATTAGGATCTCTTAAGCTAAACTTTCCACGTGTACCTGTCATGGCATTGACTGCCACTGCAACTCACCCAGTTCGCAAGGACATCTTAAATGCTTTAAGAATTCCACATGCAATTGTTCTTGAAAGAAGCTTTGACAGACCGAATTTGAAGTATGAAGTGATTGGTAAGACAAAGGAACCACTGAAGCAGCTTGGAAAACTACTAATGGATCGTTTCAAGAGTCAGTGCGGCATTGTATACTGCCTGTCAAAGAGTGAATGTGTCGAGGTATCAAAGTTTTTGAATGAGAAATGGAAAATTAAGGCAGCATATTACCATGCTGGTTTGGCTGTCAAACAGAGAGTTACTGTTCAAAAGAAATGGCATGAAGGAGAGGTCCATATCGTATGTGCAACTATTGCTTTTGGAATGGGGATAGACAAACCTGATGTTCGATTTGTCATCCACAATACAATGTCAAAATCAATTGAAAGCTATTATCAGGAATCAGGAAGGGCTGGAAGAGATAATCTTCCTGCAGTTTGCATTGCTCTATACCAGAAGAAAGATTTTAGTAGAGTTGTATGCATGATAAGAAACGGCCAAGGATATAAAAAGGAGGGTTTTAAGACAGCAATGGGTCAAGCCAAAATGATGCAACAGTACTGTGAATTAAAGGATGAATGTCGGAGACAGACCCTACTCAAACACTTCGGAGAATCATTCGATAGAAAGACCTGCAAGCATGGCTCTAGCCCTTGTGATAACTGTCTCAAGACCACATAA 1836 0.4221 MEKGSSSRKNNNQNQQDHDLELEKVRLISLALEFGFDEQSANQCFDRLVSLYGDDGRDFITVEHCGDDFLTALAESVQDTEEWDDLREMESQAVGTLNHVLEERFSPCGEGSKSFVDVIDDSPQKGRSKFVELGSSDEEDTRGNSVFSGQHTRNSMDGRSSITQGSVSSTSRKVQSSFASKDRTSTLTYEELQALDDIELANVVIFGNKTLRPLQHQACEATLAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVISPLLSLIQDQIITLNLKFGIPATFLNSQQNASQAAAVLQELRKDKPTCKLLYVTPERIAGNQTFLGILKCMNQKGQLAGFVVDEAHCVSQWGHDFRPDYRALGSLKLNFPRVPVMALTATATHPVRKDILNALRIPHAIVLERSFDRPNLKYEVIGKTKEPLKQLGKLLMDRFKSQCGIVYCLSKSECVEVSKFLNEKWKIKAAYYHAGLAVKQRVTVQKKWHEGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCMIRNGQGYKKEGFKTAMGQAKMMQQYCELKDECRRQTLLKHFGESFDRKTCKHGSSPCDNCLKTT 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi244g00019 611 CDD DEXHc_RecQ 205 402 - -
Vivi244g00019 611 Pfam DEAD/DEAH box helicase 213 382 IPR011545 GO:0003676|GO:0005524
Vivi244g00019 611 Pfam Helicase conserved C-terminal domain 420 526 IPR001650 -
Vivi244g00019 611 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 334 343 IPR002464 -
Vivi244g00019 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 250 548 IPR027417 -
Vivi244g00019 611 MobiDBLite consensus disorder prediction 140 177 - -
Vivi244g00019 611 PANTHER DNA HELICASE RECQ FAMILY MEMBER 192 608 - -
Vivi244g00019 611 NCBIfam RecQ family ATP-dependent DNA helicase 205 610 IPR004589 GO:0004386|GO:0006310
Vivi244g00019 611 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 219 395 IPR014001 -
Vivi244g00019 611 SMART helicmild6 445 527 IPR001650 -
Vivi244g00019 611 CDD SF2_C_RecQ 403 536 - -
Vivi244g00019 611 MobiDBLite consensus disorder prediction 127 177 - -
Vivi244g00019 611 Pfam RecQ zinc-binding 539 608 IPR032284 -
Vivi244g00019 611 FunFam ATP-dependent DNA helicase 403 610 - -
Vivi244g00019 611 Gene3D - 168 402 IPR027417 -
Vivi244g00019 611 SMART ultradead3 207 411 IPR014001 -
Vivi244g00019 611 Gene3D - 403 611 IPR027417 -
Vivi244g00019 611 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 417 569 IPR001650 -
Vivi244g00019 611 FunFam ATP-dependent DNA helicase 192 402 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi244g00019 425 525 Eukaryotic Initiation Factors Gene Family AT5G11170 32.673 2.47e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi244g00019 K10899 - gmx:100806070 954.51