Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi244g00011 ATGGCGACACGGAATCGCACTCCGCTTTTCCGAAAGTACAGAGACGCATTGAAGAGTGTTCGTGCTCCGTCAATTTCTTCTCCGCCGTCCACCTCTTCCGGCGGCGGTCCCGTCATTGAATTGGTCAGCACGTCGCTTCTCAATCCGAATCGATCTTACGCTCCGCTTAGTACTGAGGATCCCGGTAGTTCGAGTAAGGGTCTACATCCAATTACTGTTGGGCTACCTCCAGCATGGGTGGATGTATCTGAAGAAATATCAGCAAATGTGCAACGTGCTCGCAAAAAAATGGCAGAGTTGTCCAAGGCTCATGCGAAGGCCTTAATGCCATCGTTTGGAGACGGTAAGGATGACCAACATGCTATTGAGTCTCTAACACACGAGATAACTGACTTGATAAAGAGATCAGAAAAGAGACTGCGGAGACTTGCTGCTGCAGGGCCTTCTGAGGATTCCAATGTCAGGAAAAATGTGCAGCGTTCTCTTGCTACTGACCTTCAAAGCCTCTCTGTAGAGCTTCGCAAGAAACAATCAACTTATTTGAAGCGCCTCAGACAGCAAAAAGAGGGTCCAGATGGAGTTGACCTAGAGATCAACATAAATGGAAATAAATCTAGATTTGAAGACGATGACTTGGACAATATGATATTTAACGAGCATCAAATGGCCAAGCTAAAAAAGAGTGAAGCTTTCACAGTTGAAAGAGAAAAAGAGATCCAACAGGTTGTGGAATCTGTTAATGAGCTTGCTCAGATTATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACCATTGTTGATAGAATAGACTACAACATTCAGAATGTGGCAACCACAGTTGAGGATGGCCTTAAACAGCTTCAAAAGGCAGAGAGAACTCAGAAAAAGGGGGGCATGGTAATGTGTGCGACGGTCCTTCTTATCATGTGCTTTGTTATGTTGGTTCTCTTGGTCATTAAGGAAATTATTTTGTGA 978 0.4458 MATRNRTPLFRKYRDALKSVRAPSISSPPSTSSGGGPVIELVSTSLLNPNRSYAPLSTEDPGSSSKGLHPITVGLPPAWVDVSEEISANVQRARKKMAELSKAHAKALMPSFGDGKDDQHAIESLTHEITDLIKRSEKRLRRLAAAGPSEDSNVRKNVQRSLATDLQSLSVELRKKQSTYLKRLRQQKEGPDGVDLEININGNKSRFEDDDLDNMIFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATVLLIMCFVMLVLLVIKEIIL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi244g00011 325 SUPERFAMILY t-snare proteins 75 284 IPR010989 GO:0016020|GO:0016192
Vivi244g00011 325 CDD SNARE_syntaxin16 234 290 - -
Vivi244g00011 325 ProSitePatterns Syntaxin / epimorphin family signature. 235 274 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vivi244g00011 325 MobiDBLite consensus disorder prediction 20 40 - -
Vivi244g00011 325 Pfam SNARE domain 265 317 IPR000727 -
Vivi244g00011 325 SMART tSNARE_6 224 291 IPR000727 -
Vivi244g00011 325 MobiDBLite consensus disorder prediction 23 40 - -
Vivi244g00011 325 Coils Coil 83 103 - -
Vivi244g00011 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 229 291 IPR000727 -
Vivi244g00011 325 Gene3D - 76 283 - -
Vivi244g00011 325 SMART SynN_4 70 185 IPR006011 GO:0016020
Vivi244g00011 325 FunFam Syntaxin-43 76 283 - -
Vivi244g00011 325 PANTHER SYNTAXIN 83 310 IPR045242 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi244g00011 1 325 SNARE and Associated Proteins AT5G26980 78.899 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi244g00011 K08489 - gmx:100796741 548.125