Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi242g00048 ATGTCTTCCTCAACCCCTTACACTTACCCTCCTCCTCCTCCGCCTCTTCCTTATCTCTCCAACCTCGGCTTCGGTTACTCCATCGCCATCGCTCTCGGCTTCCTCTTCCTCCTCTCCACTCTCATCCTTTCCTCCTACCTCTGTTGCCGCACTTTCCGTAACCGTCGTAACAACCACAACAGCAACATCAACAACCAACGAAACAACCAACGAAACTCCGACGGTGTAGTTCTACCGCGGGTGATTTTCGTTGCGGAGGAGGATGATCATGATCGGGACGATATCGTTTTGGGATTGGACCAGAGCGTGATCAACTCTTACCCGAGGCTGCAGTATGGGAAGGAGATGATGGGACAGGATGGAACTTGCTCGATCTGTTTGTGTGAGTATAAGGATGCGGAGATGCTGAGGATGATGCCGGAATGTCGACACTATTTTCATCTCTGTTGTCTTGATTCGTGGTTGAAGCTTAATGGCTCTTGTCCGGTGTGCCGGAATTCGCCTATGCCGACGCCGATGTCGACGCCGTTGCAGGAGGTTGTTCCGCTTTCGCATTACATTGGTGAAAGGAGAACGAGGAGGTGA 585 0.5179 MSSSTPYTYPPPPPPLPYLSNLGFGYSIAIALGFLFLLSTLILSSYLCCRTFRNRRNNHNSNINNQRNNQRNSDGVVLPRVIFVAEEDDHDRDDIVLGLDQSVINSYPRLQYGKEMMGQDGTCSICLCEYKDAEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPMPTPMSTPLQEVVPLSHYIGERRTRR 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi242g00048 194 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Vivi242g00048 194 SMART ring_2 123 164 IPR001841 -
Vivi242g00048 194 Pfam Ring finger domain 122 165 IPR001841 -
Vivi242g00048 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 170 IPR013083 -
Vivi242g00048 194 PANTHER RING-H2 FINGER PROTEIN ATL67 9 193 IPR044289 GO:0016567|GO:0016740
Vivi242g00048 194 SUPERFAMILY RING/U-box 103 170 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi242g00048 17 187 C3H Transcription Factor Family AT5G07040 40.230 3.39e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi242g00048 - - vvo:131627490 334.724