Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi242g00037 ATGGTGGATACCGGCGATTTCGCCGGCACAATTTGTTCGATCTGCTACGAATCTCTAAACCCCATCACCGAAGATCTCCAATCCGTCACCATCTGCGGCCACGTCTTCCACGAGCTCTGCTTGCAGCAATGGTTCGAGTACTGTGCGACGTCGAAGAAACGCACTTGTCCTGTTTGTAAGCAAGGTTGCAAGGTGAAAGATGCGTGTCGGCTTTATTTTCAATCGATTGGAGATGTGAAGGAAGGTGGTCTTACTCAGAAGCAGAGAGGGGTTGAGGAAGATGCGGGTGTTTTGCGAAAGGAGGTTAAGAGATTGGAGGGGAAAGTTTCCGGGCTTAGTACGGTGTTGGAAAATCAAACTAAGGAATTGGATGAGCTTAAAGATGAGCTTTCTACTTGCAAGGAGCAGAAAATGATAGAAATAGCATCAAAAAATGAAGCCTTGAGGCAAAACGCATCCATACAAGCCCAGTTTCGTGTGAAATCAACGGAGCTTGAGAAATCAAATTTAGAGCGTTTTAGATTGCAAGAGAGAAATATGGCTTTGGCTAAAGAACTTGCAGCATTGAAATTAGTGTCTGATTTGGACCTTGGTGAAGACGAGGTTTTGAAGCTTGCCACTTTGGGTAATGGGGCCAACAGTAAAGAAACAGTAGACACTTTGAAACGATCTCTTGTTTTGCGGAACAGGAGTTACAAAGAGTTAATGGAAAAGTGTAATCTTCTTGGAAGAGGCGAGGCGAGGTATAGTAAAAAGCTTGAGAAGGCTAAAGAGAAGATCAATAAAATGAAGGCAAGGGTACAAGAACTGGCGACAGCGATGGAAGTAAAAGAAAATGAATATTTGAAGCTACTAAAAGCGGCCAAGAATATTGAAAATAAAACCAATTCTAATTCAGATGTATTGATGGCTAACAAATTTTCTTCAAAAGAGCAGACAAAACAAAGTTCAACACCCAAGTCTGGAATGGATCTGAATAAGAACGACAACAATAAATCTTCAAAATCTTTGAAGATAGATAACTCCAAAGCTACAGAAAATAAGGATGTAGATAATGATTGTATCATTATCGATGAAAATGAATACAAAGATCATAACAAGGCTGATCTAGGAAAGCCAGAAACAGCACCTGTCTCAAAGACTAAAACATCATTGCAAGGAGTATGTAATTTGGACGAGCCTTCAAGATTTGATGTTGACACAGAAATGACTGACATTACTGCTGATATTGCCACTATGGATGAGAATGCGACATTACAAGCCAATGCTAAACAAGCTCAACCAATAGTTAACATTAGAAAGGAAACACCATTGACCACTTCAAGTTCAGTGGACATATGCTTTTCTGGTGGATTGCTTGGTCCTGATGGATCTCAACGATTCTTGGGTAAATGGTGCAAGCGTGGACAAAATGGTGAATCCACAAAAGGAAATTTGATATCTGTAGGAGCTGATGGTAGAGGTGGCACAGTCAAAGTTCTAAGGAATCCAAGCCAATCCTCCTTGGATGGTAAGGAAAATTCGGTAGCTTTAAAAAGGTTGAAGGTTGGACCTAATAAAGCAAGTGGTATGCAATCCAGGGGGCGCCTGCAGATTGAACACTTTTTTGGGAGAGTCAATCAGTAA 1626 0.4108 MVDTGDFAGTICSICYESLNPITEDLQSVTICGHVFHELCLQQWFEYCATSKKRTCPVCKQGCKVKDACRLYFQSIGDVKEGGLTQKQRGVEEDAGVLRKEVKRLEGKVSGLSTVLENQTKELDELKDELSTCKEQKMIEIASKNEALRQNASIQAQFRVKSTELEKSNLERFRLQERNMALAKELAALKLVSDLDLGEDEVLKLATLGNGANSKETVDTLKRSLVLRNRSYKELMEKCNLLGRGEARYSKKLEKAKEKINKMKARVQELATAMEVKENEYLKLLKAAKNIENKTNSNSDVLMANKFSSKEQTKQSSTPKSGMDLNKNDNNKSSKSLKIDNSKATENKDVDNDCIIIDENEYKDHNKADLGKPETAPVSKTKTSLQGVCNLDEPSRFDVDTEMTDITADIATMDENATLQANAKQAQPIVNIRKETPLTTSSSVDICFSGGLLGPDGSQRFLGKWCKRGQNGESTKGNLISVGADGRGGTVKVLRNPSQSSLDGKENSVALKRLKVGPNKASGMQSRGRLQIEHFFGRVNQ 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi242g00037 541 SMART ringv_2 11 60 IPR011016 GO:0008270
Vivi242g00037 541 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 540 - -
Vivi242g00037 541 MobiDBLite consensus disorder prediction 307 344 - -
Vivi242g00037 541 Pfam Ring finger domain 11 60 IPR001841 -
Vivi242g00037 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 175 IPR013083 -
Vivi242g00037 541 SMART ring_2 12 59 IPR001841 -
Vivi242g00037 541 Coils Coil 246 294 - -
Vivi242g00037 541 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Vivi242g00037 541 Coils Coil 109 136 - -
Vivi242g00037 541 MobiDBLite consensus disorder prediction 307 330 - -
Vivi242g00037 541 CDD RING-H2 12 60 - -
Vivi242g00037 541 SUPERFAMILY RING/U-box 11 66 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi242g00037 1 541 C3H Transcription Factor Family AT4G01270 41.682 2.74e-122 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi242g00037 K11985 - gmx:100812811 632.484