Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi242g00027 ATGGTATCCGTAAACCCTAATCAAACACAAGCCTTCTACTTCTTCGATCCTTCAAACATGGGTCTTCCCGGCGTCAACCAACTCCCACCACCGCCACAACCACCTACTTCCGCCGCCGCATCTACCACCTCCGAGGATCCGAATAAGAAGATCCGAAAACCGTACACGATTACTAAATCTAGAGAGAGTTGGACTGACCAGGAGCATGACAAGTTTCTAGAAGCTCTCCAATTATTTGAACGTGACTGGAAGAAGATTGAAGCCTTTGTTGGTTCAAAAACAGTTATCCAGATACGGAGTCATGCACAGAAGTATTTTCTCAAAGTTCAGAAGAGCGGAACAAGTGAGCACGTACCTCCTCCTCGGCCAAAGAGAAAAGCTGCTCACCCATACCCTCAAAAAGCTCCAAAAAACGTTCCTACTGTGTCCCTAGTCACCGGGCCATTGCAATCTTCACCAGCTTTTGTTGACCCAGCATACATTTATAGCACAGATTCATCATCTGTGCTTGGAACACCAGTTACTAGTCTGCCTTTGTCATCTTGGAACTATAATGCGAAACCACCAGCTAGTGTGCCACAATTGACTACAGATGACACGGGATGGACTGGATCTGGACAAGCTGCTCCTCTTAATGGTTGCAATAGCAGCAGTAATGACAGCACTCACCTGGCTTTGCCAAGTAGTAATGGGATTGATCAAGGCAATCAAGGCAATGTGGGCAAGCCAGTTCATGTCATGCCAGATTTTGCACAAGTATACAACTTCATTGGCAGTGTATTTGATCCAAATTCAACTAATCACCTACAGAGATTAAAGCAGATGGACCCAATAAATGTTGAAACGACACTGCTATTGATGAGAAACCTCTCCATTAATTTAATGAGTCCAGAATTCGAGGATCATAAGAGGCTACTGTCGTCATATGATGCTGACAGTGAAAAGGGAAAGTTTGCTAATCCAAGCAGCAGCAAAACCATGCCTGTTGTAAAATCTGAAAATGCCGTTTTTTCTGCTTAG 1020 0.4441 MVSVNPNQTQAFYFFDPSNMGLPGVNQLPPPPQPPTSAAASTTSEDPNKKIRKPYTITKSRESWTDQEHDKFLEALQLFERDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHVPPPRPKRKAAHPYPQKAPKNVPTVSLVTGPLQSSPAFVDPAYIYSTDSSSVLGTPVTSLPLSSWNYNAKPPASVPQLTTDDTGWTGSGQAAPLNGCNSSSNDSTHLALPSSNGIDQGNQGNVGKPVHVMPDFAQVYNFIGSVFDPNSTNHLQRLKQMDPINVETTLLLMRNLSINLMSPEFEDHKRLLSSYDADSEKGKFANPSSSKTMPVVKSENAVFSA 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi242g00027 339 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Vivi242g00027 339 MobiDBLite consensus disorder prediction 22 56 - -
Vivi242g00027 339 SMART sant 60 108 IPR001005 -
Vivi242g00027 339 Gene3D - 64 111 - -
Vivi242g00027 339 MobiDBLite consensus disorder prediction 317 339 - -
Vivi242g00027 339 MobiDBLite consensus disorder prediction 311 339 - -
Vivi242g00027 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Vivi242g00027 339 ProSiteProfiles SANT domain profile. 59 110 IPR017884 -
Vivi242g00027 339 MobiDBLite consensus disorder prediction 111 138 - -
Vivi242g00027 339 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vivi242g00027 339 FunFam protein REVEILLE 6 isoform X1 63 111 - -
Vivi242g00027 339 CDD SANT 63 106 IPR001005 -
Vivi242g00027 339 MobiDBLite consensus disorder prediction 199 237 - -
Vivi242g00027 339 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Vivi242g00027 339 MobiDBLite consensus disorder prediction 199 240 - -
Vivi242g00027 339 PANTHER SWI/SNF COMPLEX-RELATED 36 295 - -
Vivi242g00027 339 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi242g00027 Myb_DNA-binding 8.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi242g00027 - - gmx:778090 488.034