Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi242g00026 ATGTCATTCTACGACCCATCTTTCATCAACACACAGCTCTCCAAACAAACCTCAATCTTCGGTCTCCACCTCTGGGTCATCATCGGAATCCTCGTCGGTTCCTTCATCGTCATAACCCTCTTCCTCATCTCCCTCTGCCTCACCTCACGCCGCCGCAAAAACCACCACCACCACCACCACAAAACCAACCTCAACACCCTCACTCCTATCGTCTCCAAGGAAATTCAAGAGATTAGACAAACCCCTCCGAAGCCCGAGATCCAGGCCATTGACATGGTGAAACTGGAAATTCACCGACATGTGTCGACCAGTGGAGAGAGTAGAGGAACTTCTGGTAGTGTGTGTGAAACAGTATCGTCTTCGCGTGGAAGTATGGGGCCGGAAGTTTCGCATCTTGGGTGGGGGAGATGGTATACGCTTAGAGAACTTGAAGCTGCTACTAATGGTTTGTGTGAAGAGAGTGTTATTGGGGAAGGTGGTTATGGAATTGTGTACAAAGGTGTTCTTACTGATGGTACCAGAATTGCTGTTAAGAATCTCTTGAATAATAAAGGCCAAGCTGAGAGAGAATTTAGAGTTGAGGTGGAAATAATCGGTCGTGTGCGGCACAAGAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGGGCACACAGGATGCTTGTGTATGAATATGTTGACAATGGCAATCTAGACCAATGGCTGCATGGGGATGTTGGACCTGTGAGTCCTATGACTTGGGATATCCGGATGAAAATTTTACTAGGCACAGCAAAAGGACTGGCTTATCTTCACGAGGGTCTTGAACCAAAAGTTGTTCACCGAGATGTGAAATCAAGCAACATACTCATTGATCGCCAATGGAACGCCAAAGTTTCTGATTTCGGTCTTGCTAAGCTTCTGGATTCTGACCACAGTTTTGTCACGACTCGAGTCATGGGGACGTTTGGTTATGTTGCACCCGAGTACGCTTGCACCGGAATGCTGAATGAGAGGAGTGACGTGTATAGCTTTGGGATACTCATCATGGAAATAATCAGCGGGAGAAATCCCGTTGATTATAGCAGACCAAAAGAAGAGGTTAATTTAATTGAATGGTTAAAAGATATGGTTGGCAGTCGAAGATCCGAGGAAGTAGTTGATCCTAAGCTTTCTGAGAAGCCGTCTTTAAAGGCTCTTAAGCGTGCCTTGTTGATTGCTCTTCGATGCGTTGATCCTGATTCCTCAAAGAGGCCTAAAATGGGACATGTGATCCACATGCTTGAAGCTGACGACGTCCTATTTCGCGAGGATCGAAGGAACGCTGGAGAATCTTCTCGTTCTCATCGTAACTATCAACGAGACCACAATGGTTTGAGTATAGATAAAAATCAGATAGGTGGAGAGATCACTGATCAAAGTGAAGATGATAGTAGTAGTAGAAGTCACCAAGAGCCTACTAGGTGGAGAAGATGA 1455 0.4577 MSFYDPSFINTQLSKQTSIFGLHLWVIIGILVGSFIVITLFLISLCLTSRRRKNHHHHHHKTNLNTLTPIVSKEIQEIRQTPPKPEIQAIDMVKLEIHRHVSTSGESRGTSGSVCETVSSSRGSMGPEVSHLGWGRWYTLRELEAATNGLCEESVIGEGGYGIVYKGVLTDGTRIAVKNLLNNKGQAEREFRVEVEIIGRVRHKNLVRLLGYCVEGAHRMLVYEYVDNGNLDQWLHGDVGPVSPMTWDIRMKILLGTAKGLAYLHEGLEPKVVHRDVKSSNILIDRQWNAKVSDFGLAKLLDSDHSFVTTRVMGTFGYVAPEYACTGMLNERSDVYSFGILIMEIISGRNPVDYSRPKEEVNLIEWLKDMVGSRRSEEVVDPKLSEKPSLKALKRALLIALRCVDPDSSKRPKMGHVIHMLEADDVLFREDRRNAGESSRSHRNYQRDHNGLSIDKNQIGGEITDQSEDDSSSRSHQEPTRWRR 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi242g00026 484 Gene3D Transferase(Phosphotransferase) domain 1 226 437 - -
Vivi242g00026 484 FunFam Putative receptor-like serine/threonine-protein kinase 226 436 - -
Vivi242g00026 484 MobiDBLite consensus disorder prediction 451 466 - -
Vivi242g00026 484 MobiDBLite consensus disorder prediction 434 450 - -
Vivi242g00026 484 PANTHER OS01G0323000 PROTEIN 7 443 - -
Vivi242g00026 484 CDD STKc_IRAK 156 422 - -
Vivi242g00026 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Vivi242g00026 484 Pfam Protein kinase domain 153 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi242g00026 484 ProSitePatterns Protein kinases ATP-binding region signature. 156 178 IPR017441 GO:0005524
Vivi242g00026 484 Gene3D Phosphorylase Kinase; domain 1 128 225 - -
Vivi242g00026 484 MobiDBLite consensus disorder prediction 434 484 - -
Vivi242g00026 484 SMART serkin_6 150 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi242g00026 484 FunFam Probable serine/threonine-protein kinase At1g01540 130 225 - -
Vivi242g00026 484 MobiDBLite consensus disorder prediction 104 122 - -
Vivi242g00026 484 ProSiteProfiles Protein kinase domain profile. 150 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi242g00026 484 SUPERFAMILY Protein kinase-like (PK-like) 124 422 IPR011009 -
Vivi242g00026 484 MobiDBLite consensus disorder prediction 102 122 - -
Vivi242g00026 484 MobiDBLite consensus disorder prediction 467 484 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi242g00026 123 443 Receptor kinase-like Gene Family AT4G02010 44.343 1.01e-92 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vivi242g00026 Pkinase 9.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi242g00026 - - gmx:100777348 740.339