Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi242g00021 ATGTCTGCTGTTAGGTTTTCAAATGTAAGGTTTCTACATAGTTCAATCAAGGGTTATTTCAATTTCCAAAATGTTCAAAATTACCCTAATAGGGCTTTGAATCTTGTAAGAGTTTCGAGTTTTTCGATTGATTTGTTGAGTCGTTGTTATTCCAAAGGAAAGTTTGCTCAAAATCAGTTTAGCAATTTGGGTTCTGTATCTGGTGAAAGGAGTTTGAATTCTGTGTTTGATTCTAGATTGTCTAGGGTGTGTTTCCGGAGGAGTGTTGGATTGTTGAATGTTGCTTCGATGAGTCATGTGTTGAATTGTCGAATGTATTCGTCGTCTTTGGGTGGGAAAGGAAGAGGAAATAATGAAACGGAAGTGGCTGCTAGTGGTAACGATGGTGGTGATTCGGTTGTTTCGGGTGATTTGGTTGATAGGGTGAAAGATACATGGAAGAGTGTTGCGGAGACTGCTTCTTATGCTGGGGAGAAGATTAAGGAAACTTCTGATGATCTTACTCCGCATGTTCAACAGTTGCTTGATTCACATCCTTATCTTAATATGGTGGTTGTTCCGGTTGGTGGTACTTTAACTGCCACGGTAATAGGTTGGTTCTTTTTGCCGAGGATTTTGAGGAGATTTCACAAATATGGAATGCAAGGTCCTGTTGCTCTATTTCAAGGAGGCGTGTCTGGGGAGCCAGTTCCGTATGAGAAAAGCTTTTGGGGTGCTATGGAAGACCCAGTGCGATATTTAGTTACCTTCTTGGCGTTCTCACAAATTGCTGTAATGGTAGCTCCAACAGCTATAGCATCTCAATATCTTGCTCCCACTTGGAGGGGTGCAGTGATACTTTCATTTGTATGGTTTTTGCATAGATGGAAAACAAATGTTTTTGCACGAACTTTGTCCAGTCAAAGTGTACTTGGACTTGATAGGGAGAAAATGCTTGCTCTAGACAAAATCTCATCTATTGGTCTATTTGTGATTGGCATAATGGCTTTGGCTGAGGCTTGTGGCGTGGCTGTGCAATCTATTGTAGCTGTTGGTGGTGTAGGAGGAGTTGCTACTGCTTTTGCTGCCAGAGACGTACTCGGCAATGTGTTCAGTGGTTTATCCATGCAGTTTTCAAAGCCCTTTTCAATTGGAGATACAATAAAAGCTGGATCGATAGAAGGTCAAGTGCTGGAAATTGGCCTTACTAGCACATCATTGCTGAGTCCTGAGAAGTTCCCAGTCATTGTGCCAAATTCCTTTTTTTCAAGCCAGGTAATTGTGAACAAGTCCCGTGCCGAATATCGTGCCATTATTACCAAAATCCCTCTGCAAATTGAGGATTTAAGTAGGATTTCCGAGATATCAAATGATGTAAAAAGCATGTTAACATCAAATGCAAAAGTTTTCTTAGGAAAAGATGTTCCCTACTGTTTCTTGTCACGTGTTGAAAGTTCATTTGCAGAATTGACTCTTGGATACAACCTCAAACACATGCGCAAAGATGAGTTCTACGCTGCAGAACAAGATATTCTCCTACAAGCAGTTCAGGTCATTAAGAATCACGGCGTTGCTCTTGGCAGCACATGGAATGACACTAAGTAA 1584 0.4116 MSAVRFSNVRFLHSSIKGYFNFQNVQNYPNRALNLVRVSSFSIDLLSRCYSKGKFAQNQFSNLGSVSGERSLNSVFDSRLSRVCFRRSVGLLNVASMSHVLNCRMYSSSLGGKGRGNNETEVAASGNDGGDSVVSGDLVDRVKDTWKSVAETASYAGEKIKETSDDLTPHVQQLLDSHPYLNMVVVPVGGTLTATVIGWFFLPRILRRFHKYGMQGPVALFQGGVSGEPVPYEKSFWGAMEDPVRYLVTFLAFSQIAVMVAPTAIASQYLAPTWRGAVILSFVWFLHRWKTNVFARTLSSQSVLGLDREKMLALDKISSIGLFVIGIMALAEACGVAVQSIVAVGGVGGVATAFAARDVLGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVLEIGLTSTSLLSPEKFPVIVPNSFFSSQVIVNKSRAEYRAIITKIPLQIEDLSRISEISNDVKSMLTSNAKVFLGKDVPYCFLSRVESSFAELTLGYNLKHMRKDEFYAAEQDILLQAVQVIKNHGVALGSTWNDTK 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi242g00021 527 Gene3D - 374 422 IPR023408 -
Vivi242g00021 527 Pfam Mechanosensitive ion channel 316 518 IPR006685 GO:0016020|GO:0055085
Vivi242g00021 527 Gene3D - 274 373 - -
Vivi242g00021 527 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 139 522 - -
Vivi242g00021 527 MobiDBLite consensus disorder prediction 110 125 - -
Vivi242g00021 527 SUPERFAMILY Sm-like ribonucleoproteins 358 423 IPR010920 -
Vivi242g00021 527 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 273 357 IPR011014 GO:0016020
Vivi242g00021 527 MobiDBLite consensus disorder prediction 110 129 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi242g00021 139 526 Mechanosensitive Ion Channel Family AT4G00290 66.237 0.0 556
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi242g00021 K22047 - gmx:100789047 722.235