Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi242g00018 ATGGGCTTCCCAGTAGGTTACGCCGAAGTACTCTTCCCAAACCTATTACTCCACACTCTAACCCTCCTCGGCCTCCTCCGCAACCTCGTCTTCCACCTCTTTCACTTCCTCGGCCTCTTCGAATTCCTCGAAACCGACGCCATCTGGCCCCACACCAACGCAGAAACCTCTCTCACGCATGAACCTACCAAACCCCCCTCCGTCTCAGCATCCCTAATCAGAGACCTCTTACCGGAGACAAAGTACGGCGACCTCGCCGGCATCGAAGAAGGCTGTTCCTGCGCGGTTTGTCTGTTGGAATTCTCTACGGAAGAAGAGATCCGGTGTTTGAGAAACTGTATACATATATTTCATCGAAACTGTGTGGACCGTTGGATTGATCTTGATCAGAAAAGTTGTCCTCTTTGTAGAAGAGCTTTTGTGCCTGATGAGATGATGGAGGATTATAATCAACGGCTTTGGGAGGCTTCTGGTGTTACTGAACTTTATAGTTATGCAGACTACACTTCTTCTTTTTAA 519 0.4875 MGFPVGYAEVLFPNLLLHTLTLLGLLRNLVFHLFHFLGLFEFLETDAIWPHTNAETSLTHEPTKPPSVSASLIRDLLPETKYGDLAGIEEGCSCAVCLLEFSTEEEIRCLRNCIHIFHRNCVDRWIDLDQKSCPLCRRAFVPDEMMEDYNQRLWEASGVTELYSYADYTSSF 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi242g00018 172 ProSiteProfiles Zinc finger RING-type profile. 94 137 IPR001841 -
Vivi242g00018 172 SMART ring_2 94 136 IPR001841 -
Vivi242g00018 172 Pfam Ring finger domain 93 137 IPR001841 -
Vivi242g00018 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 144 IPR013083 -
Vivi242g00018 172 PANTHER RING ZINC FINGER PROTEIN-RELATED 32 156 - -
Vivi242g00018 172 SUPERFAMILY RING/U-box 89 144 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi242g00018 1 160 C3H Transcription Factor Family AT1G63840 42.683 4.51e-43 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi242g00018 K16281 - gmx:100790975 211.46