Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi242g00012 ATGGGAGGTTGCTGTTGTTCTGCTAGAAAAACTCATCTGCATGGAACTCCAGTGTATTACTATTGCCCACCGATTTTAGAAGAGCGCGATTCTTTAACCTCTAATGATGTTCCGACCGATTCACTCACTGCTGGATTACTGGTTGGATTGAATGTGGAAGAATCCACACCTGATACTTACCAGTCTCCTCCTGCACCACTGCCTTATGATACAGTCTTGGGAGGTCCAGCATTGACGGACTCCGAGTCAGGCAGAGACACAGTTAGTGGTAGTAGTATTAAAACTTTAATTACATGTGAAGATATTGAAGAATCTGACCCTAAAGCTCAAGCTAAATCTCCCCCATTATCTCCAAGCAAGGAAGAACTGTTAAAATCAAATAAACCTCAAGCACTGGTGATAGAAGAAGAGGATGGCTGTCCAATCTGCCTTGAAGAATATGATGTTGAGAATCCGAAAACTCTAACAAAATGTGAACACCACTTTCACTTGGCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCTTGTCCTATATGTGATCAGGAAATGATATTTGATGAGGAACTTGACTAG 576 0.4184 MGGCCCSARKTHLHGTPVYYYCPPILEERDSLTSNDVPTDSLTAGLLVGLNVEESTPDTYQSPPAPLPYDTVLGGPALTDSESGRDTVSGSSIKTLITCEDIEESDPKAQAKSPPLSPSKEELLKSNKPQALVIEEEDGCPICLEEYDVENPKTLTKCEHHFHLACILEWMERSDSCPICDQEMIFDEELD 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi242g00012 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 40 188 - -
Vivi242g00012 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Vivi242g00012 191 Pfam Ring finger domain 140 180 IPR001841 -
Vivi242g00012 191 MobiDBLite consensus disorder prediction 104 126 - -
Vivi242g00012 191 CDD RING-H2_AIRP1-like 136 184 - -
Vivi242g00012 191 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
Vivi242g00012 191 SMART ring_2 140 180 IPR001841 -
Vivi242g00012 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 187 IPR013083 -
Vivi242g00012 191 SUPERFAMILY RING/U-box 131 187 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi242g00012 1 191 C3H Transcription Factor Family AT4G00335 57.068 2.05e-72 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi242g00012 - - tpra:123885727 346.665