Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi242g00006 ATGCTTGACGACGGACGGAAGGTTGATTTATTCAAGCTGTTTAATGCGGTGAAGGGTAACGGTGGGTACGAGGTTGTTTGCGATCGAGAGTTGTGGGATTTGGTTGGGGAAGAATGTGGGTTGGGTGTGAATGATGGTTTGTCTGTGAAGAGGGTTTATACTGAGTACAAGAGTGTTTTGGAGGGGTGTCTTGAGAAACTTTGTTCGGGTAAGGTATCGTATGAGAGTGTATTGATGGAATCGTTGGCTGAGGTGAAAGCGTTGTTGTCTGATCAGACAGAGAATGTGGGGGCTGGAGACGAGGTTAAGGGTGGAGTTGAATCTGAAATGACGGACGGTGGAATGATTAATGAAACTGATGTTGGAAAGATGAGCGAGGGTAATGGTGATGCGAAGGAAGTAATGGAAGAGGTTGATGGAGGGAAAGCAGCAGTGGACGCGACTAATGTGGTGAATAGTGATGAGACTGGATTGTTGAATGGCGGGGGTCGTGATGGTGGTCTCAATGATACTATTATCATTGATTCAGATTTATCTGGCGATACTGGAAAACGTTCTGGGTTAAAGAGGAAGAGAGACTCTTTGTCTGATATGATGAGTTGGATTACTCGTGTCGCGAATAACCCGTGTGATCCTGAAATTGATTACATGCCTGAAAAGTCGAAGTGGAATTCTTACGATAATCAGGAGGCTTGGAAGCAGGTTTTGTTGTTTCGGGAGGCTGTGTTTCACAAGAAACCGGCAAGCATTGAAAAGCTGAATTGGCAGAACCAGAAGATGCATCCTTGCTTGTACGATGATGCGGCTGCGACCGCCTACAATCTAAGGGAGAGGCTGAAACAAGACAAGAAACTGTTAGTTGAAAAACCAAGATCAGCTTCACAAAGCTCATCAAATTCATCCTCTGACGAACGTTTGCGTGATTCCGCAAGTACCCCTTCGAGTTATGAGATATGGGCTGATGCATGCATCTGTGTGGGGGAAAGTTATCAAGCTCGGCTGCCAGAGTGTACTGGTAGTAAGGCTTATGAAAGTGATCCTAAGTGGTTTGGGACCCAAGTATGGCCATCGTTGGAAGCAGTTGATTCTCGGTTCCTTATCGAAAGGGATCCTATAGGAAAAGGAAGACAAGAATCGTGTGGCTGTGCTGTGTCGGGTTCTATTGACTGTGTCAGATTTCACGTTTCTGAGAGAAAGGCTAAAATGAAGCTGGAGTTAGGCGCGGCTTATTACCAATGGCAATTTGATAAGATCGGTGAAGATGTTCGGCACTTGTGGTCGGATGAAGATGAGAGAAAATTCACGGAAGTGATACAGTCAAACCCTCCGTCATCTGCAAGACATTTCTGGGATCATATTTTCCGCTCATTTCCTAATAAGAGCAGTGCGGCTTTAGTCAGCTACTACTTCAATGTCTATCTTTTGCAACGCAGAGCATACCACAGCAGGCATACAGCTGATGACATTAACAGCGATGATGAAGAATCAACAAATAAGTTGAAGAGTGTTTTCGGCCATCAGAAATCACGTGACTCTGTCTTTCTGACCCCCAAGAAGCGGCACAGAAAGAGAAGATAG 1578 0.4525 MLDDGRKVDLFKLFNAVKGNGGYEVVCDRELWDLVGEECGLGVNDGLSVKRVYTEYKSVLEGCLEKLCSGKVSYESVLMESLAEVKALLSDQTENVGAGDEVKGGVESEMTDGGMINETDVGKMSEGNGDAKEVMEEVDGGKAAVDATNVVNSDETGLLNGGGRDGGLNDTIIIDSDLSGDTGKRSGLKRKRDSLSDMMSWITRVANNPCDPEIDYMPEKSKWNSYDNQEAWKQVLLFREAVFHKKPASIEKLNWQNQKMHPCLYDDAAATAYNLRERLKQDKKLLVEKPRSASQSSSNSSSDERLRDSASTPSSYEIWADACICVGESYQARLPECTGSKAYESDPKWFGTQVWPSLEAVDSRFLIERDPIGKGRQESCGCAVSGSIDCVRFHVSERKAKMKLELGAAYYQWQFDKIGEDVRHLWSDEDERKFTEVIQSNPPSSARHFWDHIFRSFPNKSSAALVSYYFNVYLLQRRAYHSRHTADDINSDDEESTNKLKSVFGHQKSRDSVFLTPKKRHRKRR 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi242g00006 525 Gene3D - 2 67 IPR036431 GO:0003677
Vivi242g00006 525 CDD SANT 426 472 IPR001005 -
Vivi242g00006 525 SUPERFAMILY ARID-like 4 56 IPR036431 GO:0003677
Vivi242g00006 525 MobiDBLite consensus disorder prediction 486 506 - -
Vivi242g00006 525 Pfam ARID/BRIGHT DNA binding domain 4 56 IPR001606 GO:0003677
Vivi242g00006 525 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Vivi242g00006 525 MobiDBLite consensus disorder prediction 290 309 - -
Vivi242g00006 525 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 521 - -
Vivi242g00006 525 CDD ARID 4 56 - -
Vivi242g00006 525 MobiDBLite consensus disorder prediction 286 309 - -
Vivi242g00006 525 MobiDBLite consensus disorder prediction 486 525 - -
Vivi242g00006 525 MobiDBLite consensus disorder prediction 97 124 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vivi242g00006 ARID 7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi242g00006 - - vvo:131627436 1050.43