Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi242g00001 ATGCATTCCGGTGGTGGTGGTCCTGGCCGGCCGGCGGGTCGGCCGTCGACTTCGGCAGCTGCTTCGCCCTCATCTTCATCTTCAGCATCACAGTTAGGATTTGAATCTTTGCAGCAGCAGCAACACCATCAACAGCAGCAACAGCAGCAGCAACAACACCAGCAACAACACCAGCAACAGCAGCAGCTAGGTTCTAGACAGACATTTCAACAGCAGCTGCTTAGAAAGCCTGAAGGAAATGAAGCATTTTTAGCATATCAAGCAGGGCGTCAAGGTGTATTTGGGAGTAACAATTTCCAACAACCTAATGCTATGCAACTGCCCCAGCAGTCTCGAAAATTCACCGATATAGCTCAGCAACATGGTTCCAATCAAGATGCTCAGCTCAGAGGTCAAAATAGCGAGCAGCAGCAAATGTTAAACCCTGTCCACCAAGCATATCTTCAATATGCTTTCCAGGCTGCGCAACAAAAGCCTACTTTGGGAGTTCATACGCAACAGCATGCTAAGATGGGAATGTTAAACCCTGCATCTGTAAAAGATCAGGAAATGCGCATGGGAAATCTGAAAATGCAGGACATTATGGCAATGCAGGCAATGAATCAAGCTCAAGGATCGTCTTCTAGGAATTCATCTGAACACAATGTCCGTGGAGAAAAGCAGATGGAGCAAGGACAACAGATAAGACCCATTCAAGCACCAGAAGCACAGCACGGCATCCAAAATGTTATGAACAGCCAGATTGCAGTAGCTGCTCAATTGCAAGCCATGCAGGCATGGGCACGTGAGAATAATATTGATTTATCACATCCTACAAATGCACATTTAATGGCAAAGCTCATTCCACTGATGCAGTCAAGGATGGCCCTACCACCAAAAACCAGTGAGAGCAACATCGGCGCACAGTCGTCATCGGTCCCTGTTTCAAAGCAGCAGGTTAATTCTCCAGCAGTTGCAAGTGAGAGCTCGGCGCATGCTAATTCATCAAGTGACATGTCTGGGCAGTCAGGTTCATCGAAAGCCAGGCATACAGTTCCTCCCAGCCATCTCGGCTCAATGGCAAATGCTGGTACAGCTGGTCAGTCCAGCGACATGGCCATGCAGCAATTCAACGTTCATGGTAAAGAGTCTCAAGCTCCTCAGAGGCAACAAGTAAAAGCTGGAAATGGAATGCCCTCTTATCATTCTCAGCAATCCTCTGCAACCATGAACCTAGGTGCAGACCATCCTTTGAATGCAAAAGGTTCATCTTCTGGTACAGAACCTCCTCAAATGCAGTACCCGAGGCAGTTAAACCAATCTACGACACAGGCTGGAGGCTCAACAAAAGAAGGGGGTTCGGGAAATTCTGCTAAATCTCAAGGGGCTCCAGCTCAGATGCATGAGCGACAAAATGGATTTACGAAACAACAGCTACATGTTCTTAAAGCACAGATACTAGCATTTAGGCGGTTAAAGAAAGGAGAAGGTACTCTGCCTCAAGAACTTCTTCAAGCTATCACTCCACCACCTCTTGAGTTGCAGGCAAAACACCCAAACCATCCTGCAGGAGGACAAAATCAAGTCAAATCTGCTGGAAATATTGTGCCAGAACAACCACGGCATGTTGAGGCCAATGAATCACAATCTAATCCTGCTGTTAATGGACCCAGTTCTGTAAAGCAGGAATCCTTTTCAAGAGATGAGAAATCTGCTCCGCCACCAGTTCATATTCAAGCTGTTGTGCCGTCTGTATCAAAGGAATCTGCTTCAACATCATCTGCTGGAAAGGAAGAGCAGAAACCAATTGGATCCTCTATTAAGCCAAAGCAGGACAATGAACATGGAAATAACAGTACTCCTGTTAGAAATGAGTTGGCATTAGATAGGGGGAAGGCAATTGCACCACAAGCCTCTGTATCTGACACAATGCAAATTACAAAACCGGCACAGGCAAACACTGTTTCTCAGCCAAAGGATGTGGGACCAACCAGAAAATATCATGGACCCCTGTTTGATTTTCCGTTCTTCACTAGGAAACATGACTCTTTTGGGTCATCTATGATGGTAAACAACAGCAATAATTTATCACTGGCATATGATGTCAAAGATCTTCTTTTTGAGGAAGGCATAGAAGTACTTGGCAAGAAGCGAACAGAAAATTTGAAGAAGATTGAAGGCTTATTGGCTGTAAACTTAGAGAGGAAACGAATTAGGCCTGACCTTGTGTTGAGACTGCAAATTGAAGAGAAAAAGCTCCGCCTTTTAGATCTTCAGGCACGTTTGAGGGATGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGTAAGTTTGTTAGGTTGTGTGAACGCCAGAGGGTGGAACTTGTTAGACAAGTACAGGCAACTCAAAAAGCTGCTAGGGAGAAGCAACTCAAATCTATATTTCTATGGCGTAAGAAACTTCTTGAGGCACACTGGGCAATTCGTGATGCCCGTACTGCCCGCAACAGGGGGGTGGCCAAATATCATGAGAGGATGTTGCGGGAATTCTCAAAACATAAAGATGACGATAGAAATAGAAGGATGGAAGCCCTAAAAAACAATGATGTTGACAGATATAGGGAGATGTTGTTGGAACAGCAGACTAGCATTCCGGGTGATGCTGCAGAGAGATATGAAGTTCTTTCATCTTTCTTATCCCAGACTGAGGAGTATCTACATAAACTAGGAAGTAAGATAACAGTTGCCAAAAACCAACAAGAAGTAGAAGAGGCAGCAAAAGCAGCTGCTGCTGCTGCAAGGTTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCTGCTGCTGCTTGTGCAGGAGAGGAAGTGATGATTAGGAATCGTTTTCTCGAGATGAATGCTCCTAGAGACAGTTCATCTGTCAACAAGTATTACAACCTCGCACATGCGGTGAATGAAATGGTTGTAAGACAACCATCCCTGTTACGAGCTGGAACTTTGAGAGACTATCAGCTTGTTGGATTGCAATGGATGCTTTCTTTGTACAACAACAAATTAAATGGAATTTTAGCTGATGAGATGGGTCTTGGTAAAACTGTACAGGTTATGGCATTGATTGCATACTTGATGGAATTCAAAGGAAACTATGGTCCACATCTTATAATAGTCCCAAATGCTGTTATGGTTAACTGGAAGAGTGAGTTATATAAGTGGTTACCATCTGTGTCATGCATTTTTTATGCTGGAGGGAAAGATTATCGAACAAAATTATTTCATCAAGTTTCTGCTCTGAAGTTTAATGTCTTGGTGACTACTTACGAGTTCATCATGTATGACCGGGCAAAACTTTCAAAAATTGATTGGAAGTATATTGTGATTGATGAAGCACAGAGAATGAAGGATAGAGATTCAGTTTTAGCACGTGACCTTGATAGGTATCGTTGTCAAAGACGTCTGCTTTTGACAGGAACACCGTTGCAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTCCCTGAGGTTTTTGATAATAAGAAAGCCTTTCATGATTGGTTCTCAAAACCATTTCAAAAAGAAGGTCCTACTCAAAATGCAGAGGATGATTGGCTCGAGACAGAAAAGAAAGTCATCACAATCCATCGACTTCATCAGATTCTTGAGCCTTTCATGCTCAGGCGCCGTGTTGAAGATGTTGAAGGCTCACTACCACCAAAGGACTCCATAGTTTTACGATGTAAAATGTCATCTGTCCAGAGTGCTATTTATGACTGGGTCAAATCAACTGGTACTCTTCGTCTTGATCCCGAGGATGAGGAACGTAAACTTCAGAGGAATCCTAACTACCAGGTGAAACAATATAAAACTTTAAACAACAGATGCATGGAGCTTCGGAAAACATGCAATCATCCGTTGCTTAATTATCCATTCTTCAGTGACTTATCTAAAGAGTTCATTGTAAAATCATGTGGAAAATTGTGGATCCTGGATAGGATCCTCATAAAACTTCAAAGAACCGGACATCGAGTTCTACTGTTCAGTACCATGACAAAACTTCTTGACATCTTGGAAGAATACCTGCAGTGGCGAAGACTTGTGTACAGAAGAATTGATGGGACAACTAGTTTGGAAGACCGTGAATCAGCTATAAATGACTTCAATGGCCCTGATTCTGACTGTTTCATCTTCTTGCTTAGTATTCGAGCTGCTGGAAGAGGCCTTAATCTTCAGTCTGCTGACACAGTTGTTATATATGACCCTGATCCAAATCCTAAAAATGAGGAGCAGGCTGTTGCCAGAGCTCATCGTATTGGACAGAAAAGACCAGTCAAGGTTATCTACATGGAAGCAGTTGTCGATAAAATCCCTAGTCATCAGAAGGAAGATGAAATGAGAGGTGGAGGCACTGCTGATTTGGAGGATGAACTTGTAGGCAAGGATCGCTACATAGGATCTATTGAGGGCCTAATAAGAAACAATATTCAGCAATATAAGATAGATATGGCTGATGAGGTAATTAATGCTGGGCGTTTCGATCAAAGAACAACACATGAAGAAAGGCGTTTGACTTTGGAGACATTATTACACGATGACGAGAGGTATCAAGAAACTGTCCATGATGTGCCGTCATTGCAGGAGGTAAATCGCATGATTGCTAGGAGCGAGGAGGAAGTGGAACTGTTTGATCAAATGGATGATGAACTGGATTGGATTGATGATATGACACGGTATGATCATGTGCCTAAATGGATTCGTGCCAATACAAAAGAAGTTAATACTGCTGTTGCTGCTTTATCAAAAAGACCATTGAAGAAAAGTTTATTGGGTGGTAGTGTTGCCGTGGATACAAGTGAACTTGGTTCAGAAAGAAAAAGAGGACGACCGAAAAAACATACTAGCTATAAAGAACTGGAAGATGAAGATTTGGAATACTCTGAAGCAAGCTTTGAAGAGAGAAATGGGTCTGCAAATGAAGAAGGGGAAACAGGAGATTTGGAAGATGATGGGTATAGTGGAGCCGATGGAGCTCAGCCCATTGATAAAGATCAGATGGAAGATGGTCTATGTGATGGTGGATATGAATTTTCTCAATCTTTAGAAATTGCCAGAAATAATCAGGTGGTTCAAGAAGCTGGTTCCTCTGGATCTTCCTCTGACGGTAAAAAAGTGACACAGATAGTATCACCATCAATTTCCTCTCAGAAATTTGGCTCCCTGTCAGCATTAGATGCCCGGCCAGGTTCCATTTCAAAAAGGATGACAGATGAGTTAGAGGAAGGGGAAATTGCAATGTCTGTTGATTCTCACATGGAGCATCAACAGTCTGGAAGTTGGATTCATGATCGTGATGAAGGTGAGGATGAACAAGTTTTGCAGAAGCCAAAGATTAAACGCAAACGTAGTCTTCGCGTTCGACCCCGTCACGCCACTGAAAAACCTGAAGAAAGATCTGGTAGTGAAATGATACCTCGTTTGTCAGTCCAAGCAGACTGTAAATATCAGGCACAGCTGAGGACTGACCTAGAATCAAAATCCCACGTAGATTCAAATGCCAGCAGGAATGATCAAAACACTTCATTAAAAAATAAGCGAACTTTACCTTCAAGGAGGGTTGCTAATACATCCAAATTACATGGTTCACCAAAGCCTACTCGTTTGAATGCCATATCTGCTCCTTCAGAGGATGGTGGCGAACATTCCAGGGAAAGCTGGGAGGGGAAGCCTATCAATTCAAGTGGATCCTCTGCTCATGGCTCTAGGATGACAGAAATCATCCAGAGAAGGTGCAAAAATGTAATTAGCAAGCTCCAAAGGAGAATAGACAAGGAAGGCCATCAAATTGTACCTCTGTTAACAGATTTGTGGAAGAGGATTGAGAATTCTGGGTTCAGTGGTGGGTCTGGGAATAACTTGTTGGATCTACGGAAGATTGATCAGCGGATTGATAAATTGGAGTATACTGGAGCCACGGATCTTGTATTTGATGTGCAGTTCATGTTAAAGAGTGCAATGCATTATTATGGTTTTTCCCTTGAGGTAAGAACTGAAGCAAGGAAGGTTCATGATCTCTTTTTTGATATATTGAAAATTGCATTTCCTGATACCGACTTCCGAGACGCAAGAAGTGCACTCTCTTTTGCCGGTCCAATTTCTGCCTCAACCACCGTATCATCTCCAAGGCAAGTAGCTGTTGGGCAAGGCAAGAGGCACAAGCTGATGAACGAGGTGGAACCTGATCCCCACCCTTCACAAAGACCACTGCAACGCGGATCAGCTTCTAGTGGAGAAAACAGTAGGATTAGAGTCCGTATGCCACCGAAGGAATCAAAAACCGGAAATGTTAGCAGCAGCAGTATACGAGAGCAACCCCGGCTGCAGGATGATTCTCCACCACTACTGACTCATCCAGGTGAGCTAGTCGTGTGCAAGAAAAGAAGAAACGACAGGGAGAAATCAACGGTGAAGACTAGGACTGGTCCTGTTTCGCCGCCGATGAGAAGTCCTGGGGCAGGTTCAGTCCCCAAAGATAGATTAACTCAACAGACTCAAGGATGGGTCGGCCAACCATCTCAACAACCAAATGGGTCAGTTGGGTGGGCTAATCCCGTAAAGAGGCTAAGAACAGATTCTGGGAAGAGAAGACCAAGTCATATGTAA 6636 0.4352 MHSGGGGPGRPAGRPSTSAAASPSSSSSASQLGFESLQQQQHHQQQQQQQQQHQQQHQQQQQLGSRQTFQQQLLRKPEGNEAFLAYQAGRQGVFGSNNFQQPNAMQLPQQSRKFTDIAQQHGSNQDAQLRGQNSEQQQMLNPVHQAYLQYAFQAAQQKPTLGVHTQQHAKMGMLNPASVKDQEMRMGNLKMQDIMAMQAMNQAQGSSSRNSSEHNVRGEKQMEQGQQIRPIQAPEAQHGIQNVMNSQIAVAAQLQAMQAWARENNIDLSHPTNAHLMAKLIPLMQSRMALPPKTSESNIGAQSSSVPVSKQQVNSPAVASESSAHANSSSDMSGQSGSSKARHTVPPSHLGSMANAGTAGQSSDMAMQQFNVHGKESQAPQRQQVKAGNGMPSYHSQQSSATMNLGADHPLNAKGSSSGTEPPQMQYPRQLNQSTTQAGGSTKEGGSGNSAKSQGAPAQMHERQNGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLQAITPPPLELQAKHPNHPAGGQNQVKSAGNIVPEQPRHVEANESQSNPAVNGPSSVKQESFSRDEKSAPPPVHIQAVVPSVSKESASTSSAGKEEQKPIGSSIKPKQDNEHGNNSTPVRNELALDRGKAIAPQASVSDTMQITKPAQANTVSQPKDVGPTRKYHGPLFDFPFFTRKHDSFGSSMMVNNSNNLSLAYDVKDLLFEEGIEVLGKKRTENLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRVELVRQVQATQKAAREKQLKSIFLWRKKLLEAHWAIRDARTARNRGVAKYHERMLREFSKHKDDDRNRRMEALKNNDVDRYREMLLEQQTSIPGDAAERYEVLSSFLSQTEEYLHKLGSKITVAKNQQEVEEAAKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLAHAVNEMVVRQPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKSELYKWLPSVSCIFYAGGKDYRTKLFHQVSALKFNVLVTTYEFIMYDRAKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFHDWFSKPFQKEGPTQNAEDDWLETEKKVITIHRLHQILEPFMLRRRVEDVEGSLPPKDSIVLRCKMSSVQSAIYDWVKSTGTLRLDPEDEERKLQRNPNYQVKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKEFIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAINDFNGPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKRPVKVIYMEAVVDKIPSHQKEDEMRGGGTADLEDELVGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDDERYQETVHDVPSLQEVNRMIARSEEEVELFDQMDDELDWIDDMTRYDHVPKWIRANTKEVNTAVAALSKRPLKKSLLGGSVAVDTSELGSERKRGRPKKHTSYKELEDEDLEYSEASFEERNGSANEEGETGDLEDDGYSGADGAQPIDKDQMEDGLCDGGYEFSQSLEIARNNQVVQEAGSSGSSSDGKKVTQIVSPSISSQKFGSLSALDARPGSISKRMTDELEEGEIAMSVDSHMEHQQSGSWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHATEKPEERSGSEMIPRLSVQADCKYQAQLRTDLESKSHVDSNASRNDQNTSLKNKRTLPSRRVANTSKLHGSPKPTRLNAISAPSEDGGEHSRESWEGKPINSSGSSAHGSRMTEIIQRRCKNVISKLQRRIDKEGHQIVPLLTDLWKRIENSGFSGGSGNNLLDLRKIDQRIDKLEYTGATDLVFDVQFMLKSAMHYYGFSLEVRTEARKVHDLFFDILKIAFPDTDFRDARSALSFAGPISASTTVSSPRQVAVGQGKRHKLMNEVEPDPHPSQRPLQRGSASSGENSRIRVRMPPKESKTGNVSSSSIREQPRLQDDSPPLLTHPGELVVCKKRRNDREKSTVKTRTGPVSPPMRSPGAGSVPKDRLTQQTQGWVGQPSQQPNGSVGWANPVKRLRTDSGKRRPSHM 2211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 1 69 - -
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 2132 2148 - -
Vivi242g00001 2211 FunFam ATP-dependent helicase BRM 982 1229 - -
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 536 555 - -
Vivi242g00001 2211 SMART bromo_6 1911 2026 IPR001487 GO:0005515
Vivi242g00001 2211 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1321 1498 IPR001650 -
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 1899 1913 - -
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 291 345 - -
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 1767 1788 - -
Vivi242g00001 2211 Gene3D - 1230 1440 IPR027417 -
Vivi242g00001 2211 FunFam ATP-dependent helicase BRM 1230 1440 - -
Vivi242g00001 2211 Pfam SNF2-related domain 994 1297 IPR000330 GO:0005524|GO:0140658
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 1761 1819 - -
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 1611 1631 - -
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 2167 2191 - -
Vivi242g00001 2211 Pfam Helicase conserved C-terminal domain 1320 1431 IPR001650 -
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 1834 1913 - -
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 17 69 - -
Vivi242g00001 2211 CDD SF2_C_SNF 1310 1441 - -
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 577 615 - -
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 536 615 - -
Vivi242g00001 2211 FunFam Brahma1 1913 2036 - -
Vivi242g00001 2211 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1003 1167 IPR014001 -
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 505 524 - -
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 354 464 - -
Vivi242g00001 2211 SUPERFAMILY Bromodomain 1965 2024 IPR036427 GO:0005515
Vivi242g00001 2211 SMART ultradead3 987 1175 IPR014001 -
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 2066 2211 - -
Vivi242g00001 2211 Coils Coil 1537 1557 - -
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 1609 1684 - -
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 2102 2117 - -
Vivi242g00001 2211 SMART helicmild6 1347 1431 IPR001650 -
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 1843 1874 - -
Vivi242g00001 2211 SMART QLQ_2 465 502 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi242g00001 2211 ProSiteProfiles QLQ domain profile. 466 502 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi242g00001 2211 PANTHER SNF2/RAD54 HELICASE FAMILY 744 1689 - -
Vivi242g00001 2211 Coils Coil 741 765 - -
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 291 464 - -
Vivi242g00001 2211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1224 1561 IPR027417 -
Vivi242g00001 2211 Coils Coil 43 63 - -
Vivi242g00001 2211 Gene3D - 982 1229 IPR038718 -
Vivi242g00001 2211 Pfam QLQ 467 500 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi242g00001 2211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 974 1220 IPR027417 -
Vivi242g00001 2211 MobiDBLite consensus disorder prediction 204 228 - -
Vivi242g00001 2211 Gene3D - 1913 2037 IPR036427 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi242g00001 1012 1456 RAD5 or RAD16-like Gene Family AT1G02670 26.104 6.59e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi242g00001 SNF2_N 4e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi242g00001 K11647 - gmx:100807104 3411.31