LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi239g00056	ATGGTTAAGTCTCAGAATATCAACAAGATCAAACAAGAACCATTAACAAAAACAAAACCAATTGTTATCTCGGATAATAGCAAGAAGAAGAAGTATAAAGGAGTGAGAATGAGAAGCTGGGGTTCATGGGTATCAGAGATTAGAGCACCGAATCAAAAAACAAGAATATGGTTAGGTTCTTATTCAACTCCGGAAGCAGCTGCTAGAGCTTACGATGCTGCACTTTTATGCCTTAAAGGTTCATCTTCAGCTTCAAATCTCAATTTCCCTTTAACAACAACATCTTCTTCAAACTGCATTATTCCTCAAGATATGTCTCCAAAATCAATCCAAAGAGTTGCTGCAGCTGCTGCAAATAATCTCAATCTCAATGTCAATGTTGAAAGTAACACTCCCTCTTCATCATCATCAATGGCTTCTTCTTCTTCGTCTTCTGATGAGGTTTCAATTATGTCGTCTTTTGATCAAGCTAACGATGAAATGAAGAATATGATGGAAAGTAATTGGTATGGATTAGAAGGTTTAGAGTCTCCGAAATATGTTGATCAGATGATGATGAGTGCTTCTTTCGTTGATTTTGGATATTCATCATATTTGTTTGATGATGTGTATGAAGAAAGTGATATTCGTTTGTGGAACTTCAGTTGA	648	0.3596	MVKSQNINKIKQEPLTKTKPIVISDNSKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSSASNLNFPLTTTSSSNCIIPQDMSPKSIQRVAAAAANNLNLNVNVESNTPSSSSSMASSSSSSDEVSIMSSFDQANDEMKNMMESNWYGLEGLESPKYVDQMMMSASFVDFGYSSYLFDDVYEESDIRLWNFS	215

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi239g00056	215	Pfam	AP2 domain	31	80	IPR001471	GO:0003700\|GO:0006355
	Vivi239g00056	215	PRINTS	Ethylene responsive element binding protein signature	32	43	IPR001471	GO:0003700\|GO:0006355
	Vivi239g00056	215	PRINTS	Ethylene responsive element binding protein signature	54	70	IPR001471	GO:0003700\|GO:0006355
	Vivi239g00056	215	SMART	rav1_2	31	96	IPR001471	GO:0003700\|GO:0006355
	Vivi239g00056	215	MobiDBLite	consensus disorder prediction	128	149	-	-
	Vivi239g00056	215	SUPERFAMILY	DNA-binding domain	31	90	IPR016177	GO:0003677
	Vivi239g00056	215	ProSiteProfiles	AP2/ERF domain profile.	31	90	IPR001471	GO:0003700\|GO:0006355
	Vivi239g00056	215	FunFam	ethylene-responsive transcription factor ERF014-like	30	92	-	-
	Vivi239g00056	215	CDD	AP2	30	90	IPR001471	GO:0003700\|GO:0006355
	Vivi239g00056	215	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED	18	164	-	-
	Vivi239g00056	215	Gene3D	AP2/ERF domain	30	92	IPR036955	GO:0003700\|GO:0006355

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi239g00056	32	214	AP2-EREBP Transcription Factor Family	AT1G21910	48.731	4.47e-42	140

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Vivi239g00056		AP2	2.7e-12	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi239g00056	-		-	cam:101495993	238.81