Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi239g00054 ATGTCTTTGAGTCCTCCAAGAGAGAGAACCAACGTCCCACATAGAAACTTCCAACTCTACTGGTGCTTCCAATGCAACCGCTCCGTCCGCGTCGCACCCGATCATTCTACCGATTTAATATGCCCGCGCTGCTTCGGCCAATTCATATGCGAAATCACCATACCAAGACCAAGGCTCATGATAGACTTCACCGCACACGATCCCTCCCCCGAAGCGCGTTTGTTAGAAGCACTTTCACTCATGATCGACACACCCACCCGAACACGACGCCCACGAGAAGTTCCCGTGCACCGTCGCACAGGAGATCATTCCACCCGAACACAACCTGAACCCGGAATCCAACATCGTCCACGTACATGGGTTATTCTACAACCTGTGGATCCTTCGGGTTCAAACACATTTGAACCCGTAATTAATCCACGTGGACGACAGGGACCATTACCGATCCCACGTGGCGTTGATGCAGGAGATTACTTTTTCGGCCCCGGTTTTAACGAACTGATAGACCAAATAACGGAAAACGACCGGCAGGGTCCACCTCCGGTGCCGGAGAGAGGCATAAATGCGATTCCGACGGTGAAAATCGAGAGTAAGAATCTGAAAGAGAATTCTCATTGTCCTGTTTGTCAGGAAGAGTTTGAAATTGGTGGTGAAGCGAGGGAACTTCCATGTAAACATATATATCATTCTGATTGCATTGTTCCGTGGCTTCGACTTCACAATTCTTGTCCGATTTGTCGACAAGAGGTTCCTGTAGGTTCTGGAGATGAGTGTAGTGAAGATGAAGGTGGTGGAGGGAGGTTACGGAGGTGCTTGAGGTGGAGTCGTGTTTCGTCTATTTGGCCTTTTCATGGAAGGTATAGGAGAGTTCATCCTCAAAGACACAATGGTTCTGGTTCTTCTTCAACAAGGGAATCTAATTCAAGGTGGCATTTTTGCTGCATTCTTTAA 951 0.4848 MSLSPPRERTNVPHRNFQLYWCFQCNRSVRVAPDHSTDLICPRCFGQFICEITIPRPRLMIDFTAHDPSPEARLLEALSLMIDTPTRTRRPREVPVHRRTGDHSTRTQPEPGIQHRPRTWVILQPVDPSGSNTFEPVINPRGRQGPLPIPRGVDAGDYFFGPGFNELIDQITENDRQGPPPVPERGINAIPTVKIESKNLKENSHCPVCQEEFEIGGEARELPCKHIYHSDCIVPWLRLHNSCPICRQEVPVGSGDECSEDEGGGGRLRRCLRWSRVSSIWPFHGRYRRVHPQRHNGSGSSSTRESNSRWHFCCIL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi239g00054 316 ProSiteProfiles Zinc finger RING-type profile. 206 247 IPR001841 -
Vivi239g00054 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 253 IPR013083 -
Vivi239g00054 316 FunFam E3 ubiquitin-protein ligase RING1-like 170 253 - -
Vivi239g00054 316 Pfam zinc-ribbon 18 52 IPR039525 GO:0061630
Vivi239g00054 316 MobiDBLite consensus disorder prediction 88 105 - -
Vivi239g00054 316 Pfam Ring finger domain 205 247 IPR001841 -
Vivi239g00054 316 SUPERFAMILY RING/U-box 187 252 - -
Vivi239g00054 316 PANTHER SI:CH211-59O9.10 88 251 - -
Vivi239g00054 316 SMART ring_2 206 246 IPR001841 -
Vivi239g00054 316 MobiDBLite consensus disorder prediction 88 113 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi239g00054 178 291 C3H Transcription Factor Family AT1G68180 46.154 1.13e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi239g00054 K11982 - gmx:100787399 370.163