Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi239g00048 ATGGACATGGAAATAGACATGGATGCTATCCACCACCTCGACTTCTCCGGAATCAGCAGCACCCTCACCAACACCCCTTCTTCTGACGATGGTTACGGTTGCAACTGGAACCACTGGTCCCCGATAGTCAACTGGGACACCTTCACAGGTGCCCCAGATGACTTTCACCACCTCATGGATACTATCATCGAGGACAGAACCACTATCCTCGACCAGTTCAGCCCAACCACCACCACCACAACCACAACCACCGAGGAGGAAGAAGAAGCCGAAACAACCACAACCACTACCACGAACACAACAACAATATCAACAACGGAAACAACACAAACAGTTGGCGATGGAAATGATTTAAAGGGGCTAAAACTAGTGCACCTATTGATGGCTGGCGCAGAAGCCTTAACCGGCTCCACCAAGAGCCGCGACTTAGCCCGAGTGATATTGGTTCGGCTCAAGGAAATGGTTTCACAACACGCCAACGGCTCCAACATGGAAAGACTCGCCGCTTATTTCACCGAAGCTCTTCACGGCCTACTAGAAGGCGCCGGGGGTGCGCACAACAACCACAACAACAAACATTACCTCACCACCAGCGGACCCCACGACAACCAAAACGACACACTCGCTGCTTTCCAACTACTCCAAGACATGTCTCCTTACGTCAAGTTCGGCCACTTCACGGCCAATCAAGCCATACTCGAGTCCGTGGCCCACGAACGCCGCGTCCATGTCGTCGACTACGACATTATGGAAGGGGTCCAATGGGCTTCACTAATCCAAGCCCTAGCTTCCAACAACAACAGCCCGCATCTCCGGATCACCGCATTATCACGAACCGGAACAGGAAGGAGGTCAATCGCCACCGTACAAGAAACCGGCCGCCGTTTAACCTCCTTCGCCGCTTCCCTCGGCCAGCCGTTTTCTTTTCACCACTGCAGGTTAGACTCCGACGAAACCTTCCGTCCTTCTTCTTTAAAGCTTGTTCGAGGAGAGGCTTTGGTTTTCAACTGCATGCTGAATCTTCCTCATCTTAGTTATCGTGCACCCGACTCAGTTGCTTCGTTTTTAAACGGAGCAAAATCTTTAAACCCGAAGCTTGTGACATTAGTCGAGGAGGAAAATGGATCTGTCATCGGCGGATTCGTGGAGCGGTTCATGGACACGCTTCATCATTACTCAGCGGTGTTTGATTCGTTAGAGGCTGGTTTTCCGATGCAGAATCGTGCCAGGGCTTTGGTGGAGCGAGTGTTTTTTGGGCCCCGAATCGCGGGTTCATTGGGCCGGATATATAGAACAGGCGGAGACGGAGAGGAGGAGAGAACGTCATGGGGGGAGTGGTTAACTGCGGCGGGGTTTAGAGGTGTTCCGGTAAGCTTTGCAAACCATTGCCAAGCGAAGCTGTTGTTGGGTCTTTTCAATGATGGGTATAAGGTTGAAGAGGTGGGTGTCGGTAGTAATAAGTTGGTGTTGGATTGGAAATCACGGCGTTTGCTTTCTGCATCTGTTTGGAGTTTTTCTTCAGATTCTGATTTATAG 1536 0.5117 MDMEIDMDAIHHLDFSGISSTLTNTPSSDDGYGCNWNHWSPIVNWDTFTGAPDDFHHLMDTIIEDRTTILDQFSPTTTTTTTTTEEEEEAETTTTTTTNTTTISTTETTQTVGDGNDLKGLKLVHLLMAGAEALTGSTKSRDLARVILVRLKEMVSQHANGSNMERLAAYFTEALHGLLEGAGGAHNNHNNKHYLTTSGPHDNQNDTLAAFQLLQDMSPYVKFGHFTANQAILESVAHERRVHVVDYDIMEGVQWASLIQALASNNNSPHLRITALSRTGTGRRSIATVQETGRRLTSFAASLGQPFSFHHCRLDSDETFRPSSLKLVRGEALVFNCMLNLPHLSYRAPDSVASFLNGAKSLNPKLVTLVEEENGSVIGGFVERFMDTLHHYSAVFDSLEAGFPMQNRARALVERVFFGPRIAGSLGRIYRTGGDGEEERTSWGEWLTAAGFRGVPVSFANHCQAKLLLGLFNDGYKVEEVGVGSNKLVLDWKSRRLLSASVWSFSSDSDL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi239g00048 511 ProSiteProfiles GRAS family profile. 114 504 IPR005202 -
Vivi239g00048 511 Pfam GRAS domain family 123 503 IPR005202 -
Vivi239g00048 511 MobiDBLite consensus disorder prediction 75 101 - -
Vivi239g00048 511 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 90 499 IPR005202 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi239g00048 82 504 GRAS Transcription Factor Family AT3G54220 34.332 4.05e-51 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi239g00048 GRAS 1.9e-100 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi239g00048 - - tpra:123896871 824.313