Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi239g00043 ATGTCACAGTTTTGTTTTTCAACAAACTATCACACCATGAAATATATCATGTTTTTTTCTTTGATTTTTCTTTTGTTTGCTACTTCTGTATCTGCTTACACATTTTCGGATCATATTTCGCCGAATTTCACTGCTTCTTATCTTCAATTCATCAGTAACACCGGCACATTCTTGTTTTCTAGAAACAAAACATTCAAGGCTGCTATATTCAATCCTGGTAACCAACAGACAAGTTTTTACCTATGCATCATTCATTCCGCGTCAAACACGATCATTTGGTCTGCTAACCGCGATGCGCCCATCTCAGATTCTGATAAGGTGAACCTAACTGCCAAAGGGATAACGATCTATGGCGAAAACGGAAAGTCCAAATGGTCGACGCCGTCGCTTAAATCACACGTACAGAAGCTTCAACTCACTGAGATGGGAAACCTTGTGTTACTTGGTCAATCCAATGAATCTCTTTGGGAGAGTTTCGACCATCCAACCGATACTATTGTTATCGGACAGCGTTTATCGGTTGGATCATCGTTGTCGAGTGCTTCTTCCAGTTCAAATTGGTCAACAGGAAATTATGTCTTGACAGTAAGTTCTTCTGATGCGATTCTTCAATGGTATGGACAAACATATTGGAAACTTTCAAGGGATTCAAAGGCTTACAAGAGTTCGAGTGATGATGTTGAGTACATGGCTGTAAACACAACAGGTTTTTATCTCTTTGGACATGATGAAACAGTACATGTCTATGAAGTTGGTTTATCAGTAACTAGTTTTCGTTTCGCGAAATTGGCTTTCAATGGCCAGTTTACAGTTAGTAGCTTTTCAGGAACAAATTTGAAGCAGGAATTTGTTGGACCAGATGATGGTTGTCAAATTCCTTTAGCTTGTGGAAGAATAGGCTTATGTAATGATAACACTTTATCATCATCATCTTCTTCTTCTTCATCTTCACCTGTTTGTTCTTGTCCTTCGAATTTCCACGGTGTCTCGGGTAATCTCGGTGGTTGTGTTCCGAACGATGGATCGCGTTCTTTGCCGTTAGCTTGTAGTAATTCTTCTACCAATAATCATAGTCAATCAAATTCTTCAGGTGTTTCGTTTTTGAGCATAGGCTATGGTGTGAGGTACTTTGCAAATGTTTATTCTGATCCATTTATGTATGGAGTGAATTTATCTGTTTGTGAAGCTTTTTGTTCAAGTAACTGTTCTTGCTTGGGAATTTTGTATAGAAATTCATCTGGTTCTTGTTACATGATTGAAAATGAATTGGGATCAATTAGTAATGGAGGTGAAGTAGATATGTTAGGCTTGATTAAAGCGAATGAGGTTTTGGTTGATATTGATGATGATGAACAAAATTCTTCCAAAGATGGGTTTCCTGTTATTGCTGCAGTGCTATTACCAAGTGGTGGAATGATTCTTTTGCTGGTTTTCGGTTTTTTTCTTTTATGGAGAAAATTCATTAAATCAAAGAAACAAGAGGTAGTATTAGGGAAACAAGTCTCGATCTCGCGTTCTTCGGGGGACTTGGATTCGGATCCCTTCTGCATTCCTGGTTTACCGACGAGGTTTGATTACGAAGAACTTGAGGTTGCTACTGAGAATTTCAAGACTCTGATAGGATCTGGTGCATTCGGCGTAGTGTACAAAGGTGTGCTACCTGATAAGACTATTGTAGCAGTGAAGAAAATAATCAATATTGGAATTCAAGGGAAGAAAGATTTCTTCGCCGAGATTGCTGTTATTGGAAACATTCATCATGTTAATTTGGTTAGACTTAAAGGCTTCTGTGCTCAAAGGGGACACCGAATGTTGGTGTATGAGTACATGAACCGTGGTTCGCTCGACAGGAACCTCTTCGGTGGGAGTGGACAACCGGTTTTGGAGTGGCAGGAGAGATTAGACGTTGCGCTTGGAACAGCGCGCGGACTCGCTTATCTTCATAGTGGATGTGAGAGTAAGATAATTCACTGTGATATCAAACCAGAGAATATTCTTCTGCATGATCAATTTCAAGCTAAGATATCTGATTTCGGACTTTCGAAGCTGCTTAGTCCTGAACAATCTGGTTTATTCACAACAATGAGAGGAACTCGCGGTTACCTTGCTCCGGAATGGCTAACAAATTCAGCAATATCTGAAAAAACTGATGTATACAGTTTCGGAATGGTGCTTCTTGAACTGATCAGTGGTAGAAAAAACTGTTCGTTCAGATCAAGAAGTCATAGCATGGATGATGAACACAACAACAGCAGTAGCAACAATGGAAATTCATCGAGCTCGTCAACAACAGAACTTGCTTATTTTCCGCTACTTGCATTAGAGATGCATGAACAAAAGAGTTACATGGATTTAGCTGATCCAAGGCTAGAAGGACGTGTTACGTTTGATGAAGTTGAGAAACTTGTTCGTATTGCATTGTGTTGTGTCCATGAAGATCCAGTGCTTAGACCAAACATGGTTAGTATTGTTGGAATGTTGGAAGGTGGGACACCATTGCCACAACCTAGGATGGAGTCTTTGAATTTTTTAAGATTTTATGGTCGTAGGTTTTCTGAGGCTTCTGTTATAGCTGAAGAAAATGAACGTGGTTCTGTGAGGATTCAACAACCACGCGATTCAACTCGGTTGGTTAGTGAGAATTCTTACATATCTTCACAACAGATCTCAGGGCCAAGATAG 2682 0.3967 MSQFCFSTNYHTMKYIMFFSLIFLLFATSVSAYTFSDHISPNFTASYLQFISNTGTFLFSRNKTFKAAIFNPGNQQTSFYLCIIHSASNTIIWSANRDAPISDSDKVNLTAKGITIYGENGKSKWSTPSLKSHVQKLQLTEMGNLVLLGQSNESLWESFDHPTDTIVIGQRLSVGSSLSSASSSSNWSTGNYVLTVSSSDAILQWYGQTYWKLSRDSKAYKSSSDDVEYMAVNTTGFYLFGHDETVHVYEVGLSVTSFRFAKLAFNGQFTVSSFSGTNLKQEFVGPDDGCQIPLACGRIGLCNDNTLSSSSSSSSSSPVCSCPSNFHGVSGNLGGCVPNDGSRSLPLACSNSSTNNHSQSNSSGVSFLSIGYGVRYFANVYSDPFMYGVNLSVCEAFCSSNCSCLGILYRNSSGSCYMIENELGSISNGGEVDMLGLIKANEVLVDIDDDEQNSSKDGFPVIAAVLLPSGGMILLLVFGFFLLWRKFIKSKKQEVVLGKQVSISRSSGDLDSDPFCIPGLPTRFDYEELEVATENFKTLIGSGAFGVVYKGVLPDKTIVAVKKIINIGIQGKKDFFAEIAVIGNIHHVNLVRLKGFCAQRGHRMLVYEYMNRGSLDRNLFGGSGQPVLEWQERLDVALGTARGLAYLHSGCESKIIHCDIKPENILLHDQFQAKISDFGLSKLLSPEQSGLFTTMRGTRGYLAPEWLTNSAISEKTDVYSFGMVLLELISGRKNCSFRSRSHSMDDEHNNSSSNNGNSSSSSTTELAYFPLLALEMHEQKSYMDLADPRLEGRVTFDEVEKLVRIALCCVHEDPVLRPNMVSIVGMLEGGTPLPQPRMESLNFLRFYGRRFSEASVIAEENERGSVRIQQPRDSTRLVSENSYISSQQISGPR 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi239g00043 893 MobiDBLite consensus disorder prediction 868 893 - -
Vivi239g00043 893 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 50 836 - -
Vivi239g00043 893 FunFam Serine/threonine-protein kinase 610 835 - -
Vivi239g00043 893 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 55 160 - -
Vivi239g00043 893 PIRSF SRK 7 887 IPR024171 GO:0004674
Vivi239g00043 893 ProSiteProfiles Protein kinase domain profile. 534 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi239g00043 893 MobiDBLite consensus disorder prediction 748 762 - -
Vivi239g00043 893 Gene3D - 53 187 - -
Vivi239g00043 893 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 213 IPR036426 -
Vivi239g00043 893 SMART blect_4 49 162 IPR001480 -
Vivi239g00043 893 FunFam serine/threonine-protein kinase PBS1-like 504 609 - -
Vivi239g00043 893 Gene3D Transferase(Phosphotransferase) domain 1 610 833 - -
Vivi239g00043 893 MobiDBLite consensus disorder prediction 739 762 - -
Vivi239g00043 893 ProSitePatterns Protein kinases ATP-binding region signature. 540 563 IPR017441 GO:0005524
Vivi239g00043 893 SMART serkin_6 534 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi239g00043 893 SUPERFAMILY Protein kinase-like (PK-like) 521 847 IPR011009 -
Vivi239g00043 893 Gene3D Phosphorylase Kinase; domain 1 512 609 - -
Vivi239g00043 893 Pfam D-mannose binding lectin 90 176 IPR001480 -
Vivi239g00043 893 ProSiteProfiles Bulb-type lectin domain profile. 42 160 IPR001480 -
Vivi239g00043 893 MobiDBLite consensus disorder prediction 865 893 - -
Vivi239g00043 893 Pfam Protein kinase domain 537 821 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi239g00043 893 CDD STKc_IRAK 540 829 - -
Vivi239g00043 893 CDD B_lectin 51 162 IPR001480 -
Vivi239g00043 893 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi239g00043 517 836 Receptor kinase-like Gene Family AT5G20050 41.994 3.40e-74 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vivi239g00043 Pkinase 2.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi239g00043 - - psat:127084110 1610.89