LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi239g00042	ATGGCCCCTTCTTCTCCGAGTAACAGTTCTCTCCAACCTCTTTCAACCGCAGAGAATGATCTCCAGCCATTCTTTGTTCTACATAAAGCTTCACATCAGTGGAAGGATAGAACATCAGCCGGACAAGGAAAACCTCGCAAGAGAAATAAGCTTTCTCTCAGATCGTCACAGAGTGCAAATGAACCGGAAGGAAGTTCAGCCGAAGAATGTGATCGCCATTTGTGTAGAAAAATGAAGATTGAGGCTTTTGATATTGTTTGGACAAAAATTGAATCTACCATTAAGGATGTCTTGAGAGACATTAATGCTAGTGTATTCAATGATATACAACAATGGGCTATGGAGTGCTTTGATACTACTAGATTGGTTGGAGAACCTAGCATTGCTGAAGCAACTCGGTCTTTTCCTGTTCTAAATAATACTACTCCTTTGAAGTTGTACACTGCATTAGTTATTACCAGAAACATAGAGTTTGTTGATGATATAATGACATTTGAAGAGCTTGGCCTTTTCTTGAAATCCCATGGATGTCATGTGGCTATGCTTTCATCAATGGAGTTTTCGTTAAGAAATGGGATTGCTGGTTGCTTGAAAGCTTTATTGCGAGAGTTTCTAGGGAGTTCTTTCGATTCACCTGATATACAAACCTTAGCATCATGGTATAGAGAACAAGACAACTACAATAAGCCACTAGTGCTGATAATTAATGATTTGGAAAGGTGTTGCGGATCAGTCTTAACTGATTTTATCCTGATGTTGAGTGAATGGGTTGTCAAGGTGCCAATCATCTTAGTATTTGGAGTTGCAACGACAGTGGATGCCCCAAGAAACATTTTTCCATCACATGCTCTTGAGTGTTTGTGCCCTTCTATGTTTATGCTTGGAACTCCAGCTGAGAGAATGGATGCAATTGTTGAATCTGTTTTTATAAAACATTGCACCACATTTAATATTGCTCATAAAGTGGCGCAGTTCTTGAGAAACTACTTCATCAACCAGGATGGGACAGTAACATCTTTTATAAGAGCTTTGAAGGTAGCATGTTTATTACACTTCTCTATGGAACCTTTGAGTCTCGTACAAGGGAGAGTTATCGTTGAAGATCAGTTGAGTAATTCTGGATTATCACCTGAGACAATGATGAAATACTTGGAGGAACTTCCATCATATGCAAGGAATAAAGAGGTTGATGAGACTAAGAAGAGCATGGCTGAGGGTTTGTCAGAATTGCTGACAGTGAAGAAACTATGGAGCACTGTGGTTCTTTGCCTATATGAGGCTGGAAAGTATAGCGGAGTGCGGCTGCTGGATTTGTTTTGTGAAGCACTCAATCAAGTTTTGTATCCATCAAAGGATTCTGTTTGTAATAAGAGGGATGAAAAAGACCATGGCCTGTCCTCATCAAATGATCCCTGTCAGCAATATTCCATCATGCAAAGTGGAGGTTGTATTTGCCAGATAGTACGCAAAGTGAGGGATCTCCCTTCAGGAAAGCTAGATCAATTGATTGAGAGTTGGGAAAAACTTACAGAAGATATTTCAGAGATTCATGAGAAACTGAAAATTTTGAAATCTTCAATAAGATGTAAAGATGGAAAGAGTTCACACAGGAATTCCAAGGACATTTCCAAGAGAGGTGTGTCCAAGGGTTCTATCAATAATGATAAGGACTCAAGAATGTCAAACTTGCAAGCTATCGCATTTCTTGATGATTTAGTCAGAAATTATTTGAGGCCCATTGAAGGAATACCGTTCCATGAAATTTTCTGCTTCAAGAATGTTGAGAAGCTTCAACTGGTTTTGATTGGAGATCCAAGGAGAAGGATTCAAGTTGATCTGTTGGAGTTCCATAATATTTTACGTTGTAGTTGCTGTAACAAGAGTGGCAAAGCCCTATTGCCATCCATGCATGATTCCTCAATTATGTATTCGCTGGCTCAAGAGCACGGAGATCTTATCAATCTTCATGACTGGTTCCAGTCTTTTAGAACAATTGTTCTTCAACATACAAATAAACGAAAACAAAAGTCGAAGCAGACTCCTCTACCCAAGAAGAGACAAGACACAAGTAGATCTGAAGATCAAAATGAAGCGTCAATTCAAGCGCGATTTTGCAGGGGAGTTACAGAGCTGCAGATCACTGGACTAGTTAGAATGCCTAGCAAGAGACGTCCAGATTTTGTACAGAGAATAGCATTCGGAATTTGA	2208	0.3949	MAPSSPSNSSLQPLSTAENDLQPFFVLHKASHQWKDRTSAGQGKPRKRNKLSLRSSQSANEPEGSSAEECDRHLCRKMKIEAFDIVWTKIESTIKDVLRDINASVFNDIQQWAMECFDTTRLVGEPSIAEATRSFPVLNNTTPLKLYTALVITRNIEFVDDIMTFEELGLFLKSHGCHVAMLSSMEFSLRNGIAGCLKALLREFLGSSFDSPDIQTLASWYREQDNYNKPLVLIINDLERCCGSVLTDFILMLSEWVVKVPIILVFGVATTVDAPRNIFPSHALECLCPSMFMLGTPAERMDAIVESVFIKHCTTFNIAHKVAQFLRNYFINQDGTVTSFIRALKVACLLHFSMEPLSLVQGRVIVEDQLSNSGLSPETMMKYLEELPSYARNKEVDETKKSMAEGLSELLTVKKLWSTVVLCLYEAGKYSGVRLLDLFCEALNQVLYPSKDSVCNKRDEKDHGLSSSNDPCQQYSIMQSGGCICQIVRKVRDLPSGKLDQLIESWEKLTEDISEIHEKLKILKSSIRCKDGKSSHRNSKDISKRGVSKGSINNDKDSRMSNLQAIAFLDDLVRNYLRPIEGIPFHEIFCFKNVEKLQLVLIGDPRRRIQVDLLEFHNILRCSCCNKSGKALLPSMHDSSIMYSLAQEHGDLINLHDWFQSFRTIVLQHTNKRKQKSKQTPLPKKRQDTSRSEDQNEASIQARFCRGVTELQITGLVRMPSKRRPDFVQRIAFGI	735

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi239g00042	735	MobiDBLite	consensus disorder prediction	670	697	-	-
	Vivi239g00042	735	MobiDBLite	consensus disorder prediction	530	544	-	-
	Vivi239g00042	735	MobiDBLite	consensus disorder prediction	530	556	-	-
	Vivi239g00042	735	CDD	Orc3	81	358	-	-
	Vivi239g00042	735	PANTHER	ORIGIN RECOGNITION COMPLEX SUBUNIT 3	16	734	IPR020795	GO:0003677\|GO:0005664\|GO:0006260
	Vivi239g00042	735	Pfam	Origin recognition complex (ORC) subunit 3 N-terminus	76	359	IPR045667	-
	Vivi239g00042	735	MobiDBLite	consensus disorder prediction	32	68	-	-
	Vivi239g00042	735	Pfam	Origin recognition complex winged helix C-terminal	606	733	IPR040855	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi239g00042	3	667	Core DNA Replication Machinery Family	AT5G16690	45.224	0.0	594

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi239g00042	K02605		-	gmx:100780646	1096.65