Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi239g00027 ATGGATGGGAAGTCTAACCTTCCGATCAAGCCAGATTCTTCTTCCCCGAGCTTCGTCCGCAACTTTCAGGCCGCCCTGAAGCGCCACCGTCCTATCGCTACAGGGCAATCCAATATCATTAGGCCAAGACGCACTATTCTTGTTAAACCACAGGATTCACTCACACAAAGAAACAACGATTCTGAAGCTAGCACTGTTGGTAACCCTTCTCAAGATGCAAATGTTCACAGCAAAGTTGCTCAAGGGGCCAATGATGAAAAGGCCAGTGAGTTGGAGAGTTTGTCTTCTTATATGAGTTCACTTGGATTCACAGATATGGAATATGTTGAAGGCAACCAACATGAAGGTTCAAGTGGATACACCAATGATGATTCTGAGCAACCTAAAATTCAGAAGGCTGAACCTGATGGAGGAGTAAGTTGCTCCATGTTGCCGAGGAGAGGTACGGTTACACGGGATAATTTGCATCAGTTCAGAAACTTTCTTAGTCAGCCAGCAACACAGTCTTCGGTGGTTGGACCTTCATGTGCCACAACTACCTCTGTCAATTCAACTTCAGCTCCTATGATGAATTCAACGACCCGTTTGCATTTGGAAAGTGGCCCTAACGTAGCGGCCGATCCTTTGGGAAAAGCTGAAAGAGTTATGGAACCAGCAAATATAGACACTAAAGCGAATAAATTATCAGTTGATAAGGCTGCAACTGTGGTGCAAACATTTGATTCTTGTGTCGACTCTGAGTTAGCAATTAGAGGGAGTGACCAATCTAAGGAACAACCAGATTGCATGTTAAAAGAAACTCACAATTCAAAATATGCTTCTTCTGATGGTGACAAATTGATCAAAGGGAAAGAGCCTGCAGATGTTATCAGCGTACAGTCTCAGGCACTGGTGCCTAAAACATCGTCTTTGGACGTGAAGTCTGAATATTCTAAGTTAGAAAAACGAGAGAAGGCTGCAAGTAGTAAAGGTTCCTCAGTCGCTAAGAAAAGGACTTATGACCCAGATTTATTTTTCAAGGTCAATGGCAAGCTTTATCAGCGTCTTGGCAAGATAGGAAGTGGAGGAAGTAGTGAGGTTCACAAGGTTATTTCATCAGATTGTAATATATTTGCACTTAAGAAGATCAAACTCAGGGGTCGTGATTATGCTACTGCATATGGATTTTGTCAAGAGATTGAGTATCTTAATAGGCTGAAAGGAAAGGACAATATTATACAGCTTATAGATTATGAGGTGACTGACAAGGCTTTGCTCGAAGAAGTTATGAAAGGCTCTCTTTGTATTAAGGATGGTCGGGTCAAAGATGATGGATATATATACATGGTTCTTGAATACGGTGAAATTGATTTAGCTCACATGTTGTCACAGCAGTGGAAGAAGCTGGGTGAATCAAACGAGATCATAGATGAAAATTGGCTCCGATTTTATTGGCAGCAAATTCTTCAAGCTGTCAATACAATTCACGAGGAACGTATTGTGCACTCTGACTTGAAGCCTGCTAACTTCCTCCTCGTCAAAGGTTCCCTAAAATTAATTGATTTCGGTATCGCCAAAGCAATAATGAGCGATACTACTAATATCCAACGGGAATCACAGGTGGGTACTCTGAGTTACATGTCTCCAGAAGCATTTATGTGTAATGAGACTGATGCGAACGGAAACATCATCAAGTGTGGTCGGCCATCAGATATCTGGTCTTTGGGGTGCATCCTCTACCAAATGGTATATGGGAGAACCCCTTTTTCAGAATACAAGACATTTTGGGCCAAATTTAAAGTTATTACAGATCCCAAACATGAAATCACCTATGAACCACTTTCAAATCCATGGTTAGTGGATCTCATGAAGAGGTGTTTAGCATGGGATCGCAACCAAAGGTGGAGAATTCCTCAGTTACTCCAACATCCTTTTCTTGCACCTCATGTACTACCTCATCCATCTTTGTCCCAAGACCATAGCTGTAAATTTGTACAACTTGTTGCTGAACCTTGTGCATATGACCCTGAAGCATCCCAACTTTGTCATCAACTCCAACGTATACTGGTTGATCCACTTGAGTCAGTGAATCACTCACTAAACTCAAGAGAACAACAAAGAACACTGTTGTCCAAACTGTCTGAACTCTGTATTCAGCTGCGGGAGCGTTTGATGGGTACTGATATTCCGTAG 2172 0.4213 MDGKSNLPIKPDSSSPSFVRNFQAALKRHRPIATGQSNIIRPRRTILVKPQDSLTQRNNDSEASTVGNPSQDANVHSKVAQGANDEKASELESLSSYMSSLGFTDMEYVEGNQHEGSSGYTNDDSEQPKIQKAEPDGGVSCSMLPRRGTVTRDNLHQFRNFLSQPATQSSVVGPSCATTTSVNSTSAPMMNSTTRLHLESGPNVAADPLGKAERVMEPANIDTKANKLSVDKAATVVQTFDSCVDSELAIRGSDQSKEQPDCMLKETHNSKYASSDGDKLIKGKEPADVISVQSQALVPKTSSLDVKSEYSKLEKREKAASSKGSSVAKKRTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCNIFALKKIKLRGRDYATAYGFCQEIEYLNRLKGKDNIIQLIDYEVTDKALLEEVMKGSLCIKDGRVKDDGYIYMVLEYGEIDLAHMLSQQWKKLGESNEIIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRESQVGTLSYMSPEAFMCNETDANGNIIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPKHEITYEPLSNPWLVDLMKRCLAWDRNQRWRIPQLLQHPFLAPHVLPHPSLSQDHSCKFVQLVAEPCAYDPEASQLCHQLQRILVDPLESVNHSLNSREQQRTLLSKLSELCIQLRERLMGTDIP 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi239g00027 723 FunFam serine/threonine-protein kinase mph1 isoform X1 460 642 - -
Vivi239g00027 723 SUPERFAMILY Protein kinase-like (PK-like) 340 651 IPR011009 -
Vivi239g00027 723 MobiDBLite consensus disorder prediction 111 142 - -
Vivi239g00027 723 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Vivi239g00027 723 ProSiteProfiles Protein kinase domain profile. 346 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi239g00027 723 Gene3D Phosphorylase Kinase; domain 1 339 426 - -
Vivi239g00027 723 Pfam Protein kinase domain 346 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi239g00027 723 PANTHER MIXED LINEAGE PROTEIN KINASE 40 670 - -
Vivi239g00027 723 Gene3D Transferase(Phosphotransferase) domain 1 459 644 - -
Vivi239g00027 723 CDD PKc_Mps1 344 639 IPR027084 -
Vivi239g00027 723 MobiDBLite consensus disorder prediction 169 188 - -
Vivi239g00027 723 MobiDBLite consensus disorder prediction 29 88 - -
Vivi239g00027 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
Vivi239g00027 723 FunFam serine/threonine-protein kinase mph1 isoform X2 339 426 - -
Vivi239g00027 723 SMART serkin_6 346 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi239g00027 723 MobiDBLite consensus disorder prediction 49 78 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi239g00027 352 639 MAP Kinase Kinase Kinase AT4G08470 28.328 7.12e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Vivi239g00027 Pkinase 6.4e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi239g00027 K08866 - gmx:100788990 951.044