Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi239g00025 ATGGAGGAATTGCATAAAGCCCTAAAGGATTGTGATTTAACCGTTTCCACCGTTCATGGAAAGGGTCGTTCTCTCTTCACTACTAGGGATTTCTACCCAGGAGAAGTGATTATTAGTCAAGAGCCTTATGTTTGTGTATCAACTCACAAAAGGTGTGATGGTTGTTTCAGAACAACTAACCTTAGCAAGTGTTCACGTTGTCAAGTTGTTTGGTATTGTGGAACACCATGTCAGAAATCGGAGTGGAGGTTGCATCGTCTTGAATGTGAAGCTCTTTCAAGGCTAGATGACCGCAAGAGAAAATCTGTTACACCGTCGATACGGTTGATGCTCAAACTTTATCTTCGAAGGAAGTTGCAAGATGAGAAGATCATTCCAAGCACTGCTATGGACAACTACAAGCTAGTGGAGGCCTTAGTGGCTCACATGTCTGACATTACAGAGGAGCAGCTGGTGTTGTATGCACAGATGGCTAATCTTGTACACTTAATACTACAATGGCCTGAAATCAATATTAAAGAGATCGCAGAAATTTTTTCCAAGTTTGCATGTAATGCACATACCATTTGTGACAGTGAATTGAGACCTTTGGGAACTGGATTGTACCCTGTTGTTTCAATTATCAATCACAGCTGCTTGCCCAATTCAGTTTTGGTTTTTGAGGGAAGGATGGCATCGGTACGTGCTTTGCAGCACTTACCCAAGGGGACTGAGGTTTTGATAAGTTATATAGAGACAGCGGGAAGCACTGTGACTCGACAGAAGGCTCTCAAAGAGCAGTACCTATTCACTTGTGTTTGTCCTCTCTGCTCTAAAGTGGGTCAGTACGATGATGTTCGAAAAAATGCAATTCTAGAAGGATACAGATGCAAAAATGAAACATGTGATGGTTTCTTGCTTCGTACAACTGACGGAAAAGCATTCCAATGCCAAGAATGTGGATTAATTAGGGACAAGGAAGAAATAAAGAAAATTGCAACTGAAATAAAATCGCTATCAGAAGAAGCTTCTAAGCCTTCTTCTAATGCCGATTATCAAGAAGCTATATCTATATATAAAATGATTGAGAAACTGCAAACAAAATTATATCATCCTTTCTCAATCAATTTGATGCAAACACGAGAGACGATTTTGAAGTCATTAATGAAGCTGGAACATTGGAGAGAAGCTTTAGCATATTGCAAACTGACCATACCAATCTATCAAAGAGTATATCCAGCTGTTCACCCTCTGCTTGGCTTGCAATATTATACTTGTGGAAAACTTGAATGGTATCTTGAAGACACAGAGGAAGCTGTTATTTCATTGACTAAGGCCCTGGATATACTAAGGATCACCCATGGTACAAATACTCCATTTGTTAAGGAACTTTTGATGATGTTGGAGGAAGCCCGTGCAGAATTAACTTACAAATCGTCTTCCAAGTAG 1428 0.3999 MEELHKALKDCDLTVSTVHGKGRSLFTTRDFYPGEVIISQEPYVCVSTHKRCDGCFRTTNLSKCSRCQVVWYCGTPCQKSEWRLHRLECEALSRLDDRKRKSVTPSIRLMLKLYLRRKLQDEKIIPSTAMDNYKLVEALVAHMSDITEEQLVLYAQMANLVHLILQWPEINIKEIAEIFSKFACNAHTICDSELRPLGTGLYPVVSIINHSCLPNSVLVFEGRMASVRALQHLPKGTEVLISYIETAGSTVTRQKALKEQYLFTCVCPLCSKVGQYDDVRKNAILEGYRCKNETCDGFLLRTTDGKAFQCQECGLIRDKEEIKKIATEIKSLSEEASKPSSNADYQEAISIYKMIEKLQTKLYHPFSINLMQTRETILKSLMKLEHWREALAYCKLTIPIYQRVYPAVHPLLGLQYYTCGKLEWYLEDTEEAVISLTKALDILRITHGTNTPFVKELLMMLEEARAELTYKSSSK 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi239g00025 475 SUPERFAMILY TPR-like 342 447 IPR011990 GO:0005515
Vivi239g00025 475 Gene3D Tetratricopeptide repeat domain 397 475 IPR011990 GO:0005515
Vivi239g00025 475 SUPERFAMILY SET domain 10 243 IPR046341 -
Vivi239g00025 475 Coils Coil 315 335 - -
Vivi239g00025 475 ProSiteProfiles Zinc finger MYND-type profile. 52 89 IPR002893 -
Vivi239g00025 475 Pfam SET domain 22 243 IPR001214 GO:0005515
Vivi239g00025 475 Gene3D - 51 98 - -
Vivi239g00025 475 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 16 463 - -
Vivi239g00025 475 SMART set_7 11 250 IPR001214 GO:0005515
Vivi239g00025 475 Pfam MYND finger 52 89 IPR002893 -
Vivi239g00025 475 ProSiteProfiles SET domain profile. 11 244 IPR001214 GO:0005515
Vivi239g00025 475 Gene3D - 102 186 - -
Vivi239g00025 475 Gene3D SET domain 24 270 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi239g00025 SET 1.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi239g00025 K11426 - gmx:100789518 756.903