Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi239g00017 ATGGTACAAACGATTGCAATGCCCGTGGCTCCTTCAGTCTCCATCAGCAATGGCCACTTCTCCAAAAGAATTTCTCTCCCTATCCTCAACACTCCCAAGCCAAAGGTTCAAAGATTAAGCATTCAGTGCGTTCGTGTCGGCGGTGTTGAAATTCCAAACAACAAACGAATTGAATTCTCGTTGCAGTACATTCACGGAGTTGGAAGGAACAGAGCGAGACAGATTCTAACTGATATCAAAATGGATAACAAAGTTACAAAGGAATTGAGTGAAGAAGAGCTTATTATTATTAGGGAAGAAGTGTCTAAATACATGATTGAAGGAGATTTGAGACGATTCAATGCGCTTAACATTAAGAGGTTGAAGGAGATTCAGTGTTACAGAGGAATTAGGCATATTCAGGGACTTCCTTGTAGAGGACAGCGAACGAAGAACAATTGCAGGACTTTGAAGGGTAAGAAGGTTACTGTTGCTGGCAAGAAGAAAAAGTAA 492 0.4106 MVQTIAMPVAPSVSISNGHFSKRISLPILNTPKPKVQRLSIQCVRVGGVEIPNNKRIEFSLQYIHGVGRNRARQILTDIKMDNKVTKELSEEELIIIREEVSKYMIEGDLRRFNALNIKRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVTVAGKKKK 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi239g00017 163 Gene3D 30s ribosomal protein s13, domain 2 113 163 IPR027437 -
Vivi239g00017 163 ProSitePatterns Ribosomal protein S13 signature. 128 141 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vivi239g00017 163 ProSiteProfiles Ribosomal protein S13 family profile. 46 152 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vivi239g00017 163 FunFam 30S ribosomal protein S13 36 112 - -
Vivi239g00017 163 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 39 161 - -
Vivi239g00017 163 Pfam Ribosomal protein S13/S18 45 149 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vivi239g00017 163 SUPERFAMILY S13-like H2TH domain 44 155 IPR010979 GO:0003676
Vivi239g00017 163 Gene3D - 44 112 - -
Vivi239g00017 163 NCBIfam 30S ribosomal protein S13 45 154 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vivi239g00017 163 FunFam 30S ribosomal protein S13 113 162 - -
Vivi239g00017 163 Hamap 30S ribosomal protein S13 [rpsM]. 43 159 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi239g00017 42 161 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 31.944 1.10e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi239g00017 K02952 - gmx:100499902 237.654