Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi239g00006 ATGCTTTCGTTCATCTGCACCTTGTTATTGCCGCCGATGACCGGAGAACGATGTTACCGCCGCAAGAATATGGCGGAACAAGCCTCTGCCGCCGTTGCTGACGTCGAGGAGAGGCCTTCACTGGCCAGTTTCCCCGCCTCTTTGGAAATTGATTACTTATCCCAGGCGAGGAAAGCTCTAAGCGAGCGTTGTCCTTTCGATGTTGCTGAGGAGACGTCGACTTCGACTTCTGCTGCTGTTACTCTGCCGAGTGGGTTAGCAAGTTTGTTGAGCCGCCAAGGGGATAGCCGGAAGCGTCAGAAGAAGTCCCATTCTGGTGGCGGTGATAAAAAGAAGAAATCCTCTAGAGCGGCCGAGAAGTTGCGCGGGTTTGATGTTTGGGCTGAGACTGAGGAGTGTTTCAGGGACTTGAACTTGTCTGATATTGACACTTTATTGGAGGCTTCTACTTCTTATAGTTTAGCTTCTCGCGAGTGTTATACAATTCCGCATTTCGGAAATTCTCCAAGGTTTAATGTAGTTAGTAGTGAGGATGAGAAGAAGCATGCGCCATTATTCAATGTAGTTAGTAGTGAGAATGAGAAGAATGTTGTGGAAGAGGTGAACAACGAGAATGGTTCATTGGGAATTGAGTTAAGTGACGTGGTTGAATTGGAAAAAGCTTTGCCTAATGATGACAAGAATTGTGACGCATCTGATTCCTGTGATAGTTTAGAGTGGTTTTTAGGTAGTAGGAATAGGATTTTTTTAGCTTCTGAACGTCCGTCCAAGAAAAGGAAGCTTTTGGGCGGTGATGCTGGTTTGGAGAAAGTTTTAATGACTAAATCTTGTGATGGGGAACAACCTTGTTGTCATTATTGTGGTAGAGGAGATTCTGGCACGGATTCGAACAGGTTAATAGTCTGCGCTTCCTGTAAAGTCGCAGTTCATTGGAAGTGCTATGGTATACAAGATGATGTTGACGAGTCTTGGTTGTGCTCTTGGTGTAAGCAAAAGAGTGAGGTTGATGATTCGGTGAGTCCATGTGTTCTTTGCTCAAAGAAGGGCGGCGCTTTAAAACCAGTTAATAGTGTTGATGAAGCTGTTGAGTCTGCCGAGTTTGTGCACCTGTATTGTTGTCTGTGGATGCCGGAGGTTTACATTGATGATTTAAAGAAGATGGAGCCTGTTATGAATGTGGGAGGTATCAAGGATACCAGAAGAAAATTGGTGTGTAATGTTTGCAAATTGAAATGCGGTGCATGTGTTAGATGCAGTCATGGATCCTGCAGAACTTCTTTCCATCCTTTATGTGCAAGGGAAGCTAGACATAGAATGGAGGTTTGGGCAAAGTACGGTAATGATAATATTGAGTTGCGGGCTTTTTGCTTGAAACACTCAGATCTACAAGAGAAAAGAAACATCTTGCCATTGGGAGGCTCTATTGCAGTTGGCAATGAATTTCCAAAAGCTAATGACCTTCCAGTGACATTGCCAGTAAAAAGTGAACACAAAGTAAAAATTGGTTGCAGCAATGGAGGGTTGGAGTCTGATACCAATCCAGACATGTTGAACCATAATGATGAACCTCCTGACGGAGGATTGTCTGTCTGTACGGTTAGTGCTCAAAATATGTTGGGATGTGGCGCTGCGCCACCACATAATATTGGGGTGGAAGGGAGAACCAATGAGAATGTTAATGCCTCTGATTCCCCCAGTTTTGCACTTGTTTTGAAAAAGTTGATAGAGAGAGGGAAAGTTGATGTAAACAATGTAGCATTGGAGATTGGCATTTCACCAGATATGTTAACTACAAATATCAATTTGCAGGAAGGTCATATGGCCCCTGATGTGCAACACAAAATAGTCAATTGGCTAAAAGCCCATGTGTATACTGGAGCATTTCACAATGGTTTAAAAGCCAAAATCAAACCAGCCAATGTATCTATGGATGAAAGTGGAGCTTCAGACGGTTCTGATACCTCGCCGTTATCTGATTCAGGCTTACCGAATCCGGTTGCTGTTAATGTTAAGTCTGTACCACCAAGGAGAAGAACTATCAGTAACATTAGGATTTTGAAGGATAATAAAGTGATATGTTCATCGGAGGGGGTTACTACTAGTGAGAATGGCGTATCAATTGATAAGTTCCTAGTTCCTGAGTGTGAAAATCCAGGAATTTCCAACAAAGCAACAATTCCTGATGCCACTGAAACTGAAACGAATATAACAAAGTCTGATGATGTATTTCATGGGGTTCAAGGTAATGCTGATAAGCCCTACAAACCCAGCTTATCTGTATGCGTTCCAGATCAGAAGTCTACTACTTATTTGCAGAATGCTTCCATGCTTTCTGATCAGCACTATCCAGCTCATTCTGCTTCAGAGCCACCCGTTCCTGGTTCCACGAAAATGGAAGCAATCTCTAGTTACATTCACCCATACATTAACAAGAAATTACATCATATTCGTGATTGCTTGGCCCCGGAGGATCTTATAGGTTTAAGTGGCTACAGAAATTCTTTGGTTGAATCCTCTGGAGCTAATAGCTGCTCAAGTAGGGAAAATCAGCAATTAATTTGCACCGATGTTCACAAGCCTGATCAAGTAAAAGTAAAACAGTTGGTTAGGAATAAAAATATGCAACTTTTGGAATTTTATTCAGAAGATGAGTTGGAGACGGAGCTTTTATATTTTCAGCATAAACTACTACAGAGAGCAGTTGCGAAAAAGAGCCTTACTGAAAACTTAGTCTACAATGTTGCAAAGGGTTTGCCTCTGGAGATTGATAAAACACATCAACAAAGATGGGATGCTGTGATTGCTAATCAATATCTGCTTGATCTTAGGGAGGCAAAGAAACTGGGTAGAAAAGAAAAAAAGCACAAGGAAGCCCAGGCAGTGTTGGCTGCTGCAACTGCAGCAGCTGCAGCATCTTCCAGGGTTTCTTCTTTTCGTAAAGATACCATTGATGAATCTGTGCAACACGAGAATTCATTTAAGGTGGATGCTTTAAGCGGGCTAACTGGTGCATGTCCTCAGCCAATGCCACGTGCTAAAGAGACTCTTTCGAGAGTTGCTGTCACTAGAGCTTCATCAGAAAAATATTCGGATTTTTCTCTGCCAAACTCAGATTTTTCTAAGGAGCAGCGTAAATCATGTGATATCTGCAGACGGTTTGAGAATATGTTAAATCCTATCCTAGTCTGTTCTGCTTGCAAGGTTGTGGTGCACTCTGTTTGTTATCGCAGTGTGAAAGAAACGACAGGTCCGTGGTTCTGTGAATTGTGTGAAGACTTGTCCAAAAGTACTGGGGCATCTGCTATAAATAGCTGGGAGAAGCCTTACTTTATTGCAGAGTGTGCTCTCTGTGGTGGTACTACCGGTGCGTTTAGGAAATCTTCTGATGGTCAATGGGTTCATGCCTTCTGTGCTGAGTGGCTTTTTGAGTCTACATTCAGAAGAGGACAAATAGATGCAATTGAAGGAATGGAGACTGTGCGAAAAGGAGTTGATATTTGTTGCGTCTGCCACCGCAGGCACGGTGTTTGTATGAGGTGTTGTTATGGCCATTGCCTGACCACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTGTTCATGATTGTGAGGACTGCTGGGGGCAAGATGCAACACAAGGCTTACTGTGAAAAGCATAGTTCGGAGCAGAGAACAAAGGCTGAAACTCCAAAGCATGGTGTTGAAGAATTAAAAAGTATCAAGCAAATTAGGGTTGAACTTGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGGGAAAAAATAAAGCGGGAGTTGGTTCTATGCTCACATGACATACTTGCCTTTAAAAGAGATCATATTGCTAGGTCTGTGCTTGTTCAGAGTCCTTTCCTCCTTCCAGACGGTAGTTCAGAATCAGCTACAACATCCCTTAAAGCTGCCACAGAGGGATACAGATCATGCAGTGAAGCGCTCCAAAGATCAGATGATGTAACTGTGGATAGTTCAGTTTCTGCTAAGCACCGTGTCAGAGTTGCCGTATCCATGGACACAGACCCAAAATTGGATGATGACTGCTCAACCTCACAAAGTCAATATAACCACAAGATTCCAGAAAAGATGCAATTTTCTGGCAAACAGATTCCTCGTAGAGCTTCTGCTACATCACACAATATCTCTGAGGAGGATGGATGGAGAACCAAATCTCGAAAGTTACAGACTACTGAAACATTTGGAAAAGAGCTTGTTATGACATCAGATGAAGCATCTATGAAGAATTCAAGGCTGCCTAAAGGATATGCATATGTTCCTGCGGATTGCCTATCAAATGACAAGCAGTCTAATGAAGATGTATATGCTAGTGGACCAGGGGAACATGACAGGTAG 4371 0.4283 MLSFICTLLLPPMTGERCYRRKNMAEQASAAVADVEERPSLASFPASLEIDYLSQARKALSERCPFDVAEETSTSTSAAVTLPSGLASLLSRQGDSRKRQKKSHSGGGDKKKKSSRAAEKLRGFDVWAETEECFRDLNLSDIDTLLEASTSYSLASRECYTIPHFGNSPRFNVVSSEDEKKHAPLFNVVSSENEKNVVEEVNNENGSLGIELSDVVELEKALPNDDKNCDASDSCDSLEWFLGSRNRIFLASERPSKKRKLLGGDAGLEKVLMTKSCDGEQPCCHYCGRGDSGTDSNRLIVCASCKVAVHWKCYGIQDDVDESWLCSWCKQKSEVDDSVSPCVLCSKKGGALKPVNSVDEAVESAEFVHLYCCLWMPEVYIDDLKKMEPVMNVGGIKDTRRKLVCNVCKLKCGACVRCSHGSCRTSFHPLCAREARHRMEVWAKYGNDNIELRAFCLKHSDLQEKRNILPLGGSIAVGNEFPKANDLPVTLPVKSEHKVKIGCSNGGLESDTNPDMLNHNDEPPDGGLSVCTVSAQNMLGCGAAPPHNIGVEGRTNENVNASDSPSFALVLKKLIERGKVDVNNVALEIGISPDMLTTNINLQEGHMAPDVQHKIVNWLKAHVYTGAFHNGLKAKIKPANVSMDESGASDGSDTSPLSDSGLPNPVAVNVKSVPPRRRTISNIRILKDNKVICSSEGVTTSENGVSIDKFLVPECENPGISNKATIPDATETETNITKSDDVFHGVQGNADKPYKPSLSVCVPDQKSTTYLQNASMLSDQHYPAHSASEPPVPGSTKMEAISSYIHPYINKKLHHIRDCLAPEDLIGLSGYRNSLVESSGANSCSSRENQQLICTDVHKPDQVKVKQLVRNKNMQLLEFYSEDELETELLYFQHKLLQRAVAKKSLTENLVYNVAKGLPLEIDKTHQQRWDAVIANQYLLDLREAKKLGRKEKKHKEAQAVLAAATAAAAASSRVSSFRKDTIDESVQHENSFKVDALSGLTGACPQPMPRAKETLSRVAVTRASSEKYSDFSLPNSDFSKEQRKSCDICRRFENMLNPILVCSACKVVVHSVCYRSVKETTGPWFCELCEDLSKSTGASAINSWEKPYFIAECALCGGTTGAFRKSSDGQWVHAFCAEWLFESTFRRGQIDAIEGMETVRKGVDICCVCHRRHGVCMRCCYGHCLTTFHPSCARSAGLFMIVRTAGGKMQHKAYCEKHSSEQRTKAETPKHGVEELKSIKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHIARSVLVQSPFLLPDGSSESATTSLKAATEGYRSCSEALQRSDDVTVDSSVSAKHRVRVAVSMDTDPKLDDDCSTSQSQYNHKIPEKMQFSGKQIPRRASATSHNISEEDGWRTKSRKLQTTETFGKELVMTSDEASMKNSRLPKGYAYVPADCLSNDKQSNEDVYASGPGEHDR 1456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi239g00006 1456 CDD ePHD 1114 1219 - -
Vivi239g00006 1456 MobiDBLite consensus disorder prediction 645 662 - -
Vivi239g00006 1456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1022 1100 IPR013083 -
Vivi239g00006 1456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 462 IPR013083 -
Vivi239g00006 1456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1111 1222 IPR013083 -
Vivi239g00006 1456 ProSiteProfiles Zinc finger PHD-type profile. 281 332 IPR019787 -
Vivi239g00006 1456 MobiDBLite consensus disorder prediction 643 669 - -
Vivi239g00006 1456 MobiDBLite consensus disorder prediction 1374 1397 - -
Vivi239g00006 1456 ProSiteProfiles Extended PHD (ePHD) domain profile. 339 460 IPR034732 -
Vivi239g00006 1456 MobiDBLite consensus disorder prediction 1433 1456 - -
Vivi239g00006 1456 ProSiteProfiles Extended PHD (ePHD) domain profile. 1111 1220 IPR034732 -
Vivi239g00006 1456 MobiDBLite consensus disorder prediction 91 117 - -
Vivi239g00006 1456 SUPERFAMILY FYVE/PHD zinc finger 275 334 IPR011011 -
Vivi239g00006 1456 ProSiteProfiles Zinc finger PHD-type profile. 1044 1093 IPR019787 -
Vivi239g00006 1456 SUPERFAMILY FYVE/PHD zinc finger 1037 1091 IPR011011 -
Vivi239g00006 1456 Pfam PHD-zinc-finger like domain 341 459 - -
Vivi239g00006 1456 Pfam PHD-zinc-finger like domain 1113 1219 - -
Vivi239g00006 1456 ProSitePatterns Zinc finger PHD-type signature. 1047 1090 IPR019786 -
Vivi239g00006 1456 SMART PHD_3 1046 1091 IPR001965 -
Vivi239g00006 1456 SMART PHD_3 1166 1220 IPR001965 -
Vivi239g00006 1456 SMART PHD_3 283 330 IPR001965 -
Vivi239g00006 1456 SMART PHD_3 404 460 IPR001965 -
Vivi239g00006 1456 Pfam PHD-finger 297 330 - -
Vivi239g00006 1456 Pfam PHD-finger 1058 1091 - -
Vivi239g00006 1456 ProSitePatterns Zinc finger PHD-type signature. 284 329 IPR019786 -
Vivi239g00006 1456 Coils Coil 1240 1260 - -
Vivi239g00006 1456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 336 IPR013083 -
Vivi239g00006 1456 PANTHER PHD FINGER PROTEINS 80 982 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi239g00006 284 467 C2H2 Transcription Factor Family AT3G14740 28.877 3.66e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi239g00006 - - tpra:123896915 2343.54