Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi239g00005 ATGCTTTCGTTCATCTGCACCTTGTTATTGCCGCCGATGACCGGAGAACGATGTTACCGCCGCAAGAATATGGCGGAACAAGCCTCTGCCGCCGTTGCTGACGTCGAGGAGAGGCCTTCACTGGCCAGTTTCCCCGCCTCTTTGGAAATTGATTACTTATCCCAGGCGAGGAAAGCTCTAAGCGAGCGTTGTCCTTTCGATGTTGCTGAGGAGACGTCGACTTCGACTTCTGCTGCTGTTACTCTGCCGAGTGGGTTAGCAAGTTTGTTGAGCCGCCAAGGGGATAGCCGGAAGCGTCAGAAGAAGTCCCATTCTGGTGGCGGTGATAAAAAGAAGAAATCCTCTAGAGCGGCCGAGAAGTTGCGCGGGTTTGATGTTTGGGCTGAGACTGAGGAGTGTTTCAGGGACTTGAACTTGTCTGATATTGACACTTTATTGGAGGCTTCTACTTCTTATAGTTTAGCTTCTCGCGAGTGTTATACAATTCCGCATTTCGGAAATTCTCCAAGGTTTAATGTAGTTAGTAGTGAGGATGAGAAGAAGCATGCGCCATTATTCAATGTAGTTAGTAGTGAGAATGAGAAGAATGTTGTGGAAGAGGTGAACAACGAGAATGGTTCATTGGGAATTGAGTTAAGTGACGTGGTTGAATTGGAAAAAGCTTTGCCTAATGATGACAAGAATTGTGACGCATCTGATTCCTGTGATAGTTTAGAGTGGTTTTTAGGTAGTAGGAATAGGATTTTTTTAGCTTCTGAACGTCCGTCCAAGAAAAGGAAGCTTTTGGGCGGTGATGCTGGTTTGGAGAAAGTTTTAATGACTAAATCTTGTGATGGGGAACAACCTTGTTGTCATTATTGTGGTAGAGGAGATTCTGGCACGGATTCGAACAGGTTAATAGTCTGCGCTTCCTGTAAAGTCGCAGTTCATTGGAAGTGCTATGGTATACAAGATGATGTTGACGAGTCTTGGTTGTGCTCTTGGTGTAAGCAAAAGAGTGAGGTTGATGATTCGGTGAGTCCATGTGTTCTTTGCTCAAAGAAGGGCGGCGCTTTAAAACCAGTTAATAGTGTTGATGAAGCTGTTGAGTCTGCCGAGTTTGTGCACCTGTATTGTTGTCTGTGGATGCCGGAGGTTTACATTGATGATTTAAAGAAGATGGAGCCTGTTATGAATGTGGGAGGTATCAAGGATACCAGAAGAAAATTGGTGTGTAATGTTTGCAAATTGAAATGCGGTGCATGTGTTAGATGCAGTCATGGATCCTGCAGAACTTCTTTCCATCCTTTATGTGCAAGGGAAGCTAGACATAGAATGGAGGTTTGGGCAAAGTACGGTAATGATAATATTGAGTTGCGGGCTTTTTGCTTGAAACACTCAGATCTACAAGAGAAAAGAAACATCTTGCCATTGGGAGGCTCTATTGCAGTTGGCAATGAATTTCCAAAAGCTAATGACCTTCCAGTGACATTGCCAGTAAAAAGTGAACACAAAGTAAAAATTGGTTGCAGCAATGGAGGGTTGGAGTCTGATACCAATCCAGACATGTTGAACCATAATGATGAACCTCCTGACGGAGGATTGTCTGTCTGTACGGTTAGTGCTCAAAATATGTTGGGATGTGGCGCTGCGCCACCACATAATATTGGGGTGGAAGGGAGAACCAATGAGAATGTTAATGCCTCTGATTCCCCCAGTTTTGCACTTGTTTTGAAAAAGTTGATAGAGAGAGGGAAAGTTGATGTAAACAATGTAGCATTGGAGATTGGCATTTCACCAGATATGTTAACTACAAATATCAATGAAGGTCATATGGCCCCTGATGTGCAACACAAAATAGTCAATTGGCTAAAAGCCCATGTGTATACTGGAGCATTTCACAATGGTTTAAAAGCCAAAATCAAACCAGCCAATGTATCTATGGATGAAAGTGGAGCTTCAGACGGTTCTGATACCTCGCCGTTATCTGATTCAGGCTTACCGAATCCGGTTGCTGTTAATGTTAAGTCTGTACCACCAAGGAGAAGAACTATCAGTAACATTAGGATTTTGAAGGATAATAAAGTGATATGTTCATCGGAGGGGGTTACTACTAGTGAGAATGGCGTATCAATTGATAAGTTCCTAGTTCCTGAGTGTGAAAATCCAGGAATTTCCAACAAAGCAACAATTCCTGATGCCACTGAAACTGAAACGAATATAACAAAGTCTGATGATGTATTTCATGGGGTTCAAGGTAATGCTGATAAGCCCTACAAACCCAGCTTATCTGTATGCGTTCCAGATCAGAAGTCTACTACTTATTTGCAGAATGCTTCCATGCTTTCTGATCAGCACTATCCAGCTCATTCTGCTTCAGAGCCACCCGTTCCTGGTTCCACGAAAATGGAAGCAATCTCTAGTTACATTCACCCATACATTAACAAGAAATTACATCATATTCGTGATTGCTTGGCCCCGGAGGATCTTATAGGTTTAAGTGGCTACAGAAATTCTTTGGTTGAATCCTCTGGAGCTAATAGCTGCTCAAGTAGGGAAAATCAGCAATTAATTTGCACCGATGTTCACAAGCCTGATCAAGTAAAAGTAAAACAGTTGGTTAGGAATAAAAATATGCAACTTTTGGAATTTTATTCAGAAGATGAGTTGGAGACGGAGCTTTTATATTTTCAGCATAAACTACTACAGAGAGCAGTTGCGAAAAAGAGCCTTACTGAAAACTTAGTCTACAATGTTGCAAAGGGTTTGCCTCTGGAGATTGATAAAACACATCAACAAAGATGGGATGCTGTGATTGCTAATCAATATCTGCTTGATCTTAGGGAGGCAAAGAAACTGGGTAGAAAAGAAAAAAAGCACAAGGAAGCCCAGGCAGTGTTGGCTGCTGCAACTGCAGCAGCTGCAGCATCTTCCAGGGTTTCTTCTTTTCGTAAAGATACCATTGATGAATCTGTGCAACACGAGAATTCATTTAAGGTGGATGCTTTAAGCGGGCTAACTGGTGCATGTCCTCAGCCAATGCCACGTGCTAAAGAGACTCTTTCGAGAGTTGCTGTCACTAGAGCTTCATCAGAAAAATATTCGGATTTTTCTCTGCCAAACTCAGATTTTTCTAAGGAGCAGCGTAAATCATGTGATATCTGCAGACGGTTTGAGAATATGTTAAATCCTATCCTAGTCTGTTCTGCTTGCAAGGTTGTGGTGCACTCTGTTTGTTATCGCAGTGTGAAAGAAACGACAGGTCCGTGGTTCTGTGAATTGTGTGAAGACTTGTCCAAAAGTACTGGGGCATCTGCTATAAATAGCTGGGAGAAGCCTTACTTTATTGCAGAGTGTGCTCTCTGTGGTGGTACTACCGGTGCGTTTAGGAAATCTTCTGATGGTCAATGGGTTCATGCCTTCTGTGCTGAGTGGCTTTTTGAGTCTACATTCAGAAGAGGACAAATAGATGCAATTGAAGGAATGGAGACTGTGCGAAAAGGAGTTGATATTTGTTGCGTCTGCCACCGCAGGCACGGTGTTTGTATGAGGTGTTGTTATGGCCATTGCCTGACCACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTGTTCATGATTGTGAGGACTGCTGGGGGCAAGATGCAACACAAGGCTTACTGTGAAAAGCATAGTTCGGAGCAGAGAACAAAGGCTGAAACTCCAAAGCATGGTGTTGAAGAATTAAAAAGTATCAAGCAAATTAGGGTTGAACTTGAGAGATTACGTCTCCTTTGTGAAAGAATTGTCAAACGGGAAAAAATAAAGCGGGAGTTGGTTCTATGCTCACATGACATACTTGCCTTTAAAAGAGATCATATTGCTAGGTCTGTGCTTGTTCAGAGTCCTTTCCTCCTTCCAGACGGTAGTTCAGAATCAGCTACAACATCCCTTAAAGCTGCCACAGAGGGATACAGATCATGCAGTGAAGCGCTCCAAAGATCAGATGATGTAACTGTGGATAGTTCAGTTTCTGCTAAGCACCGTGTCAGAGTTGCCGTATCCATGGACACAGACCCAAAATTGGATGATGACTGCTCAACCTCACAAAGTCAATATAACCACAAGATTCCAGAAAAGATGCAATTTTCTGGCAAACAGATTCCTCGTAGAGCTTCTGCTACATCACACAATATCTCTGAGGAGGATGGATGGAGAACCAAATCTCGAAAGTTACAGACTACTGAAACATTTGGAAAAGAGCTTGTTATGACATCAGATGAAGCATCTATGAAGAATTCAAGGCTGCCTAAAGGATATGCATATGTTCCTGCGGATTGCCTATCAAATGACAAGCAGTCTAATGAAGATGTATATGCTAGTGGACCAGGGGAACATGACAGGTAG 4365 0.4282 MLSFICTLLLPPMTGERCYRRKNMAEQASAAVADVEERPSLASFPASLEIDYLSQARKALSERCPFDVAEETSTSTSAAVTLPSGLASLLSRQGDSRKRQKKSHSGGGDKKKKSSRAAEKLRGFDVWAETEECFRDLNLSDIDTLLEASTSYSLASRECYTIPHFGNSPRFNVVSSEDEKKHAPLFNVVSSENEKNVVEEVNNENGSLGIELSDVVELEKALPNDDKNCDASDSCDSLEWFLGSRNRIFLASERPSKKRKLLGGDAGLEKVLMTKSCDGEQPCCHYCGRGDSGTDSNRLIVCASCKVAVHWKCYGIQDDVDESWLCSWCKQKSEVDDSVSPCVLCSKKGGALKPVNSVDEAVESAEFVHLYCCLWMPEVYIDDLKKMEPVMNVGGIKDTRRKLVCNVCKLKCGACVRCSHGSCRTSFHPLCAREARHRMEVWAKYGNDNIELRAFCLKHSDLQEKRNILPLGGSIAVGNEFPKANDLPVTLPVKSEHKVKIGCSNGGLESDTNPDMLNHNDEPPDGGLSVCTVSAQNMLGCGAAPPHNIGVEGRTNENVNASDSPSFALVLKKLIERGKVDVNNVALEIGISPDMLTTNINEGHMAPDVQHKIVNWLKAHVYTGAFHNGLKAKIKPANVSMDESGASDGSDTSPLSDSGLPNPVAVNVKSVPPRRRTISNIRILKDNKVICSSEGVTTSENGVSIDKFLVPECENPGISNKATIPDATETETNITKSDDVFHGVQGNADKPYKPSLSVCVPDQKSTTYLQNASMLSDQHYPAHSASEPPVPGSTKMEAISSYIHPYINKKLHHIRDCLAPEDLIGLSGYRNSLVESSGANSCSSRENQQLICTDVHKPDQVKVKQLVRNKNMQLLEFYSEDELETELLYFQHKLLQRAVAKKSLTENLVYNVAKGLPLEIDKTHQQRWDAVIANQYLLDLREAKKLGRKEKKHKEAQAVLAAATAAAAASSRVSSFRKDTIDESVQHENSFKVDALSGLTGACPQPMPRAKETLSRVAVTRASSEKYSDFSLPNSDFSKEQRKSCDICRRFENMLNPILVCSACKVVVHSVCYRSVKETTGPWFCELCEDLSKSTGASAINSWEKPYFIAECALCGGTTGAFRKSSDGQWVHAFCAEWLFESTFRRGQIDAIEGMETVRKGVDICCVCHRRHGVCMRCCYGHCLTTFHPSCARSAGLFMIVRTAGGKMQHKAYCEKHSSEQRTKAETPKHGVEELKSIKQIRVELERLRLLCERIVKREKIKRELVLCSHDILAFKRDHIARSVLVQSPFLLPDGSSESATTSLKAATEGYRSCSEALQRSDDVTVDSSVSAKHRVRVAVSMDTDPKLDDDCSTSQSQYNHKIPEKMQFSGKQIPRRASATSHNISEEDGWRTKSRKLQTTETFGKELVMTSDEASMKNSRLPKGYAYVPADCLSNDKQSNEDVYASGPGEHDR 1454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi239g00005 1454 ProSitePatterns Zinc finger PHD-type signature. 1045 1088 IPR019786 -
Vivi239g00005 1454 ProSiteProfiles Extended PHD (ePHD) domain profile. 1109 1218 IPR034732 -
Vivi239g00005 1454 SMART PHD_3 283 330 IPR001965 -
Vivi239g00005 1454 SMART PHD_3 1164 1218 IPR001965 -
Vivi239g00005 1454 SMART PHD_3 1044 1089 IPR001965 -
Vivi239g00005 1454 SMART PHD_3 404 460 IPR001965 -
Vivi239g00005 1454 ProSiteProfiles Zinc finger PHD-type profile. 1042 1091 IPR019787 -
Vivi239g00005 1454 ProSiteProfiles Zinc finger PHD-type profile. 281 332 IPR019787 -
Vivi239g00005 1454 Coils Coil 1238 1258 - -
Vivi239g00005 1454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1020 1098 IPR013083 -
Vivi239g00005 1454 PANTHER PHD FINGER PROTEINS 80 980 - -
Vivi239g00005 1454 ProSiteProfiles Extended PHD (ePHD) domain profile. 339 460 IPR034732 -
Vivi239g00005 1454 CDD ePHD 1112 1217 - -
Vivi239g00005 1454 MobiDBLite consensus disorder prediction 91 117 - -
Vivi239g00005 1454 SUPERFAMILY FYVE/PHD zinc finger 275 334 IPR011011 -
Vivi239g00005 1454 SUPERFAMILY FYVE/PHD zinc finger 1035 1089 IPR011011 -
Vivi239g00005 1454 MobiDBLite consensus disorder prediction 643 660 - -
Vivi239g00005 1454 Pfam PHD-zinc-finger like domain 1111 1217 - -
Vivi239g00005 1454 Pfam PHD-zinc-finger like domain 341 459 - -
Vivi239g00005 1454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 462 IPR013083 -
Vivi239g00005 1454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1109 1220 IPR013083 -
Vivi239g00005 1454 ProSitePatterns Zinc finger PHD-type signature. 284 329 IPR019786 -
Vivi239g00005 1454 MobiDBLite consensus disorder prediction 1372 1395 - -
Vivi239g00005 1454 MobiDBLite consensus disorder prediction 641 667 - -
Vivi239g00005 1454 MobiDBLite consensus disorder prediction 1431 1454 - -
Vivi239g00005 1454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 336 IPR013083 -
Vivi239g00005 1454 Pfam PHD-finger 1056 1089 - -
Vivi239g00005 1454 Pfam PHD-finger 297 330 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi239g00005 284 467 C2H2 Transcription Factor Family AT3G14740 28.877 3.73e-16 80.1