Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi238g00039 ATGCCTCTTTATGAGTTATACCGTTTGGCTAGAGAGAAGCTTGGGAATGAGAGTAACACCACAAGTGTAGCTGATCAACCTTCCTCACCTGAGAATGATTTTTTTGAGCTGGTTTGGGAGAGTGGTCAGATTTCGAGCCAAGGTCAATCGAGTCGAGGTAGAAAGAGTAGTCCACCTTGCAGGAGTTTGCCATCTCACTGCTTACCCTCACATAGTCCGAGAGGTCGAGAGAAAGACGTTGGAGGAGGATACGGTAGCAATCAAAAGATAGGAAAGTTTGGTGATTTAGAGTCTGGTTTGAATGAGATTCCGATATCAGTGCCATCTCGCGAAGTAGATGAAATGATGCCTTGGTTGGATTATTCGATGGATGGTTCTTTGCCAACTGAATATGGTTCTGATTTCTTAAATGAACTACATAACGACATCCCTGCATCGAATAGTTTTACTTTATTCGATAAAAGGAGTAATGGAAATCAGGTGTTTAGGGACTCGAATAAAAATTCTGCAGAACCGATGAATGTTTCGAAGGGTTCTTCAGCTGAACAGGTTGAGACTGCGAGAAATAAAGCTAGCACCAATCAGTTATATCCGCCATCGTCGAATCAATGTCAAACATCATTTGTACCTGTTAGATCTAGGGAATCGGATATACATGAAAACAATAATGCAAGTAATGGTAACCAGGATGTGCCTTACGGTGTTCCATCTTCCTCAAGTGATTTTTCTAGCTTAAAGGCGCAGAAGCAAGATCCTAAAATGCCCGGCAATGGTTCCAATGTAGTGAATTTTTCCCATTTTGCAAGGCCCGCTGCTATTGTGAGAGCTAATCTCCAGAACATTGGGCTGAAGTCTGGTTTGATTTCACCTTCAGCAAGATCGGATAGTATTGGAATTAAGAATAGAGGTGAAGCTTCAACTAGCAGCAACCCTCCTGAATCAGCTCTTGTTAATTCGAGCGGCGAGTGTTCAAAGGAACCAGAGATTCGGTGTCAGAAGGCGGTGGTGCAATCCAAGGCTGATTTGAAACCTTTGCAGACGAAATCTCTTGAAACGAATGTTGTGGCTTCTAAACAATCTGAGCCTGTTTGCAAAGAGAGTGGAATTAAAAAAGATCAACCTTCCAATCAAGTTCTTGGCGACGGTGGCACTAAAGTACAAACAGCTGCGGAAAAAGGTATAGAGACGGCAATAGCATCTTCTTCTATTTGCTCTGGCAACGGTGCAGACAGAGGCTCGGATGATCCAAATCGAGATTTAAAACGGAAAAATAGAGACACTGATGACTCTGAATGCCATAGTGAAGATGTTGAGGAGGAATCACTGGGTGTTAAGAAGGGGGCTTCCGGACGAGGAGTTGCAGGTTCCAAAAGAAGCCGTGCTGCTGAAGTGCATAATCTATCTGAAAGGAGACGAAGAGACAGAATAAATGAGAAGATGCGTGCATTACAAGAACTCATACCTAACTGCAATAAGGTGGATAAAGCTTCAATGCTTGATGAGGCAATCGAGTATCTAAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGTGCTGGTTTATATATGCCTCAAATGATGTTACCTGCTGGAATGCAGCACATGCATGCACCACACATGGCTGCATTTTCGCCTATGAGCATTGGCATGCATATGGGGTTAGGTATGGGCTATGGAATGGGAATACCTGACATGAACGGTGGACCTTCTAGATTTCCAATGATGCCTCAGATGCAAGGAACTCATATCCCTATGTCTGGACCTTCTGCTATACATGGGATGGCCAGATCGAATCCTCAAGGGTTTGGGCTTCCAGGTCAGGGAATTTCCTTGCCGATGCCGCGAGCTCCTGTATTTCCTTTTTCAGGAGGGCCTGTTTTGAACTCATCAGCTCCTGGACCATCTGCGTATGGATCCACCGGACTTGTTGAAACCGCGAATCCGGCTTCAGTGTCGGGCTCAAAAGATCCAATGCGGAATGTGGACTCTCAAATTAAACAAAGCGCATGTGGCCGCGACCCTACAAACCAGATTCCTAATCAGTCGGCTTTGGCGCATAATGGTGGTCATCCCTTGGTGGCCGATGACAGTAGAGCTGCTAATCCTGGAAAATAA 2118 0.4462 MPLYELYRLAREKLGNESNTTSVADQPSSPENDFFELVWESGQISSQGQSSRGRKSSPPCRSLPSHCLPSHSPRGREKDVGGGYGSNQKIGKFGDLESGLNEIPISVPSREVDEMMPWLDYSMDGSLPTEYGSDFLNELHNDIPASNSFTLFDKRSNGNQVFRDSNKNSAEPMNVSKGSSAEQVETARNKASTNQLYPPSSNQCQTSFVPVRSRESDIHENNNASNGNQDVPYGVPSSSSDFSSLKAQKQDPKMPGNGSNVVNFSHFARPAAIVRANLQNIGLKSGLISPSARSDSIGIKNRGEASTSSNPPESALVNSSGECSKEPEIRCQKAVVQSKADLKPLQTKSLETNVVASKQSEPVCKESGIKKDQPSNQVLGDGGTKVQTAAEKGIETAIASSSICSGNGADRGSDDPNRDLKRKNRDTDDSECHSEDVEEESLGVKKGASGRGVAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPQMMLPAGMQHMHAPHMAAFSPMSIGMHMGLGMGYGMGIPDMNGGPSRFPMMPQMQGTHIPMSGPSAIHGMARSNPQGFGLPGQGISLPMPRAPVFPFSGGPVLNSSAPGPSAYGSTGLVETANPASVSGSKDPMRNVDSQIKQSACGRDPTNQIPNQSALAHNGGHPLVADDSRAANPGK 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi238g00039 705 PANTHER TRANSCRIPTION FACTOR PIF3 1 678 IPR044273 GO:0003700|GO:0006355
Vivi238g00039 705 MobiDBLite consensus disorder prediction 353 383 - -
Vivi238g00039 705 MobiDBLite consensus disorder prediction 286 322 - -
Vivi238g00039 705 FunFam Basic helix-loop-helix transcription factor 455 518 - -
Vivi238g00039 705 Pfam Helix-loop-helix DNA-binding domain 464 510 IPR011598 GO:0046983
Vivi238g00039 705 MobiDBLite consensus disorder prediction 39 95 - -
Vivi238g00039 705 MobiDBLite consensus disorder prediction 158 212 - -
Vivi238g00039 705 MobiDBLite consensus disorder prediction 402 473 - -
Vivi238g00039 705 Gene3D - 455 518 IPR036638 GO:0046983
Vivi238g00039 705 SMART finulus 466 515 IPR011598 GO:0046983
Vivi238g00039 705 MobiDBLite consensus disorder prediction 648 685 - -
Vivi238g00039 705 MobiDBLite consensus disorder prediction 39 58 - -
Vivi238g00039 705 MobiDBLite consensus disorder prediction 648 705 - -
Vivi238g00039 705 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 460 509 IPR011598 GO:0046983
Vivi238g00039 705 MobiDBLite consensus disorder prediction 286 321 - -
Vivi238g00039 705 MobiDBLite consensus disorder prediction 412 445 - -
Vivi238g00039 705 CDD bHLH_AtPIF_like 460 522 IPR047265 -
Vivi238g00039 705 MobiDBLite consensus disorder prediction 158 260 - -
Vivi238g00039 705 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 457 522 IPR036638 GO:0046983
Vivi238g00039 705 MobiDBLite consensus disorder prediction 220 247 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi238g00039 1 580 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.392 4.74e-71 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi238g00039 HLH 7.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi238g00039 K12126 - gmx:100794974 955.666