Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi238g00034 ATGGGAAGACACTCTTGCTGCTACAAGCAGAAGTTAAGGAAAGGACTTTGGTCTCCAGAAGAAGATGAGAAGCTTTTGAATTACATTACCAAACATGGTCATGGATGTTGGAGTTCAGTCCCAAAACTAGCTGGTTTGCAGAGATGTGGCAAGAGCTGCAGGTTAAGATGGATAAATTATTTGAGACCTGATTTGAAGAGAGGAGCATTCTCACAACAAGAAGAGAATTTGATCATTGAACTTCATGCAGTACTTGGAAACAGATGGTCTCAGATTGCAGCACAATTACCAGGAAGAACCGACAATGAGATTAAGAATCTATGGAACTCATGTCTCAAGAAGAGGTTGAGACAAAGTGGCATTGATCCAAACACTCATAAACCGCTCTCCGAGATTGAAAATGATAATGAAAAACCACTCACAGCAAACAAAAGCAATCAAAAGGCTTCGGTTTCGTCGAACGAAGTTATGAGTTTGGTAATGGAACCTACTAAAGCTTCTATAGATCATGGTTACCCTCTAGAAGTTTCTACTTCCTCCAAGATCAACAACAATGGTAGCAGCAGCCATGAATTATTCCTAGACAGGTTCAACACCACAGGCTATTTTTCTTTCCAGAACATGAACTACGGATCAAACATCGGAATTTCCGAGAATCCAAATGCGTCTATTTGTTTCACACCATCCTCATCTTCTTCACAAATGATGTCAGATACAAATTCTGTCATAAACTCCAACATGCTTCATTCTGTTACAACCTCAATTTTCCAAACACCAACGCAAGTAAAACCAACCGTTTCCGTTTCCTCGGACGGAGTTCATAACTGGGAAGCAAGCAACTACAACACCATTAGCAACACAAGCAAAACCGTTTCCAGCGCGAACTTTCTCGACAGCGGAACTCTACCGTTACAAGAAGAAATGAAATGGTCTGAATATCTCAACACACCATTTCTCATGCAGAATCAGCCTCCTCAATCTATCTACGCCGATGCCAAACCAGAAACAGGTAATTTCATAACTGATGAATCGTGTACTAGTTGGAGCCAATGCCAACCGCAACAACAACAACAACAACAACAGCAGCAACAAGGTTTTCAACTTTCTGATATATATAGCAAGGATCTGTAG 1131 0.4085 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKRLRQSGIDPNTHKPLSEIENDNEKPLTANKSNQKASVSSNEVMSLVMEPTKASIDHGYPLEVSTSSKINNNGSSSHELFLDRFNTTGYFSFQNMNYGSNIGISENPNASICFTPSSSSSQMMSDTNSVINSNMLHSVTTSIFQTPTQVKPTVSVSSDGVHNWEASNYNTISNTSKTVSSANFLDSGTLPLQEEMKWSEYLNTPFLMQNQPPQSIYADAKPETGNFITDESCTSWSQCQPQQQQQQQQQQQGFQLSDIYSKDL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi238g00034 376 MobiDBLite consensus disorder prediction 351 370 - -
Vivi238g00034 376 FunFam MYB transcription factor 68 140 - -
Vivi238g00034 376 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi238g00034 376 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vivi238g00034 376 SMART sant 66 114 IPR001005 -
Vivi238g00034 376 SMART sant 13 63 IPR001005 -
Vivi238g00034 376 Gene3D - 11 67 - -
Vivi238g00034 376 MobiDBLite consensus disorder prediction 119 154 - -
Vivi238g00034 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vivi238g00034 376 CDD SANT 17 61 IPR001005 -
Vivi238g00034 376 MobiDBLite consensus disorder prediction 139 154 - -
Vivi238g00034 376 MobiDBLite consensus disorder prediction 351 376 - -
Vivi238g00034 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vivi238g00034 376 FunFam Myb transcription factor 11 67 - -
Vivi238g00034 376 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi238g00034 376 Gene3D - 68 152 - -
Vivi238g00034 376 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vivi238g00034 376 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi238g00034 376 CDD SANT 69 109 IPR001005 -
Vivi238g00034 376 PANTHER MYB DOMAIN PROTEIN 55 1 338 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi238g00034 1 376 MYB Transcription Factor Family AT1G09540 47.805 7.35e-107 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi238g00034 Myb_DNA-binding 2.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi238g00034 K09422 - qsa:O6P43_010970 459.144