Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi238g00028 ATGGGTATCAAGGGTTTAACAAAGCTTTTAGCCGATAATGCCCCATCATCCATGAAGGAGAACAAATTCGAAAGCTACTTTGGCCGCAAGATTGCTGTTGATGCCAGCATGAGCATTTACCAGTTTCTTATTGTTGTGGGAAGAAGTGGAGCTGAAATGCTCACTAATGAAGCTGGCGAAGTTACTAGTCATTTGCAAGGAATGTTTTCACGGACTATCAGACTTCTAGAAGCCGGGATGAAGCCAGTATATGTTTTTGATGGGAAGCCACCAGATATGAAGAACCAAGAGCTGAAAAAACGTCTCTCAAGGAGAGCTGAGGCGGAAGAGGGTTTGTCAGTAGCAATAGAGGCTGACAATAAGGAAGATATTGAAAAATTCAGTAAACGGACAGTGAAGGTGACTAAACAACATAATGAAGACTGCAAAAAACTTTTAAGACTCATGGGAGTGCCCGTTGTGGAGGCACCCTCAGAAGCAGAGGCTCAGTGTGCTGCTCTTTGCAAAGCAGGAAAGGTGTATGCTGTGGCTTCTGAAGATATGGATTCCTTAACATTTGGAGCTCCTAAATTTCTTCGCCATCTAATGGATCCTAGCTCAAAGAAGGTTCCAGTAATGGAATTTGACATTGCAAAGATTTTGGCGGAGCTAGATCTGACCATGGACCAATTTATTGACTTGTGCATTCTTTCTGGATGTGATTACTGTGACAACATTCGAGGTATTGGGGGCCTAACAGCTTTGAAGCTCATACGCCAACACGGCTCTATTGAAAACATACTGGAAAACCTAAACAAAGAGAGGTACCAGATAGCTGACGATTGGCCATATCAGGAGGCTCGACGACTTTTTAAAGAACCACTGGTCTCAACTGATGATGAAGAACTTAATCTTAAGTGGTCTCCTCCAGATGAAGAAGGATTAATAACATTTCTAGTAAATGAGAATGGGTTCAGCAGTGACAGGGTGACAAGGGCAATAGAAAAAATTAAAGCGGCAAAGAACAAGTCATCACAAGGGCGATTGGAATCATTTTTTAAGCCAACTGCAAATCCATCTGTACCTATCAAACGGAAGGGAAGCAAATGCACGCTTAGGTCTTTCAAACCAGCAATTGATCATAAGATGTCCTCTCTGCAAATTTCTAACTGTTCAAGGTCCATGATTTTCGGCAAGTTAAGAATGCCGATCTATAATCTGGGTTCCGAGCTTTCTGTGCCATCGTCTAGAGGTGTCTGCTTTGGTGCCTGA 1251 0.4269 MGIKGLTKLLADNAPSSMKENKFESYFGRKIAVDASMSIYQFLIVVGRSGAEMLTNEAGEVTSHLQGMFSRTIRLLEAGMKPVYVFDGKPPDMKNQELKKRLSRRAEAEEGLSVAIEADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFDIAKILAELDLTMDQFIDLCILSGCDYCDNIRGIGGLTALKLIRQHGSIENILENLNKERYQIADDWPYQEARRLFKEPLVSTDDEELNLKWSPPDEEGLITFLVNENGFSSDRVTRAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKGSKCTLRSFKPAIDHKMSSLQISNCSRSMIFGKLRMPIYNLGSELSVPSSRGVCFGA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi238g00028 416 Gene3D - 219 286 - -
Vivi238g00028 416 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 354 IPR036279 -
Vivi238g00028 416 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Vivi238g00028 416 CDD PIN_FEN1 4 332 - -
Vivi238g00028 416 SMART xpgineu 147 219 IPR006086 GO:0004518
Vivi238g00028 416 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Vivi238g00028 416 Pfam XPG N-terminal domain 1 108 IPR006085 GO:0004518
Vivi238g00028 416 SMART 53exo3 29 301 IPR002421 GO:0003677
Vivi238g00028 416 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
Vivi238g00028 416 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Vivi238g00028 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Vivi238g00028 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Vivi238g00028 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Vivi238g00028 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Vivi238g00028 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Vivi238g00028 416 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Vivi238g00028 416 CDD H3TH_FEN1-Euk 222 289 - -
Vivi238g00028 416 Gene3D - 2 218 - -
Vivi238g00028 416 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 368 IPR006084 -
Vivi238g00028 416 SMART xpgn3 1 108 IPR006085 GO:0004518
Vivi238g00028 416 FunFam Flap endonuclease 1 10 222 - -
Vivi238g00028 416 FunFam Flap endonuclease 1 219 286 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi238g00028 1 412 Core DNA Replication Machinery Family AT5G26680 78.398 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi238g00028 K04799 - cave:132187694 674.085