Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi238g00021 ATGGCTTCCATTTCCGGTGCCATTGGAACTCCTCCCTCTCTTCAAATTCCCAAAACCCCAGCCTCCTTTTCACTCCACAACACTTCCCGTTTCAACACCCTTCTCCGTCTCCGTCCCAACCACAAAACCCCCGCCGTTTCTTTCGTTATCTCCGCTATTGCCTCTCCCAACACTTCCACTCTCACCGCTCAAGAAGCCTTCAAGGGTTTTAACGTTGATGACGGCTCTAATGACCAACTCAACAACCTCCCTGTTGCCGTCAGCAAAGACGAACTCGACGTTTCCAAACTCGGTTTTCCTTCTCGGCTTGTGGACTCCCTCCGAAGACGAGGAATTACCAGTCTCTTCCCTATTCAGAGAGCCGTGTTGCTGCCTGCAATGGAAGGTAGAGACATCATTGCTCGTGCAAGGACTGGGACTGGGAAGACACTAGCATTTGGAATTCCAATTATCAAGGGTCTCACTGAGAATGAAGAAAGCACCATGAGGCGGGGGCGGCTTCCTAAAGTACTGGTCCTTGCACCAACTAGGGAGTTAGCAAAGCAAGTCGAGAAGGAGATACAGGAATCTGCACCTTTTCTGAACACTGTTTGTGTTTATGGTGGTGTTTCTTATGATATTCAGAGGAATGCGCTTTCACGTGGTGTTGATGTTGTGGTTGGAACACCTGGGAGACTAATTGACTTGATAAATGGGAAAAGCCTTAGACTTAATGAAATTCAGTATTTGGTACTTGATGAGGCCGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAATTGATTTTAGAAAAGATCCCTTCTCAGCGGCAGATCATGCTTTTCTCTGCAACCATGCCGGGTTGGGTGAAGAAGTTGTCAAGAAAACATTTGAACAATCCTTTGACTATTGATTTGGTCGGTGATAGAGAAGAAAAGCTTGCTGAGGGAATCAAACTTTATGCTGTATCAGCCACTGCATCATCAAAGCGGAGAATTCTTTATGGTCTTATAAATGAATATGGAAAGGGTGGGAAGACTATTGTTTTCACACGGACAAAAAGGGATGCTGATGAAATAGCACTGTCATTATCAAATAGTATACCTTCTAAAGCACTGCATGGTGATATCTCTCAGTATCAGAGAGAGAAAACATTGAACGGTTTTCGGCAAGGGAGATTCACAGTGCTTGTTGCTACTGACGTTGCTTCTCGTGGACTAGATATTCCCAATGTTGATTTGATTATACATTATGAACTTCCCGATGGTCCCGAGACTTTTGTTCACCGCTCTGGTCGTACAGGACGTGCTGGAAAAGAGGGTGCTGCTGTAGTAATGTACACCGCTACCCAGAAAAGAACTGTTATGTCCTTTGAGCGTGACATAGGCTCCAGGTTTGAATTTATTAGTCCACCACCTATGCAAGATTTACCAGAATTACCTACCAGGCTAGGTGTTGATACACTCGATAGAGATAGAAGTATTCGGAGAGGTTCTAGGGATCAGAGAGGTTATAGAACTGGTGGGGATGACTGGTCAAGTGGTGTTAGACGATCAGGTGGGGATGACTGGTCAAGTGGAGGTAGGCGATCAGGTGGGGATGACTGGTCAAGTGGAGGTAGGCGATCAGGTGGGGATGACTGGTCAAGTGGAGGTAGGCGATCAGGTGGAGATGACTGGTCAAGTGGAGGTAGGCGATCAGGTGGGAATGACTTTTTAAGTGGAGGTAGACGGTCAAGCGGATATTCGTTATCAAACAGAACTTCATCGCCAAACAGATCTTCATCGCCAAACAGATATTCATCGCCAAACGGAGGGGCTTGTTTTAATTGCGGAGAATCAGGGCATCGGGCGTCAGAGTGTCCCAGTAAACGAGACTTATTTTAG 1869 0.4639 MASISGAIGTPPSLQIPKTPASFSLHNTSRFNTLLRLRPNHKTPAVSFVISAIASPNTSTLTAQEAFKGFNVDDGSNDQLNNLPVAVSKDELDVSKLGFPSRLVDSLRRRGITSLFPIQRAVLLPAMEGRDIIARARTGTGKTLAFGIPIIKGLTENEESTMRRGRLPKVLVLAPTRELAKQVEKEIQESAPFLNTVCVYGGVSYDIQRNALSRGVDVVVGTPGRLIDLINGKSLRLNEIQYLVLDEADQMLAVGFEEDVELILEKIPSQRQIMLFSATMPGWVKKLSRKHLNNPLTIDLVGDREEKLAEGIKLYAVSATASSKRRILYGLINEYGKGGKTIVFTRTKRDADEIALSLSNSIPSKALHGDISQYQREKTLNGFRQGRFTVLVATDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGRAGKEGAAVVMYTATQKRTVMSFERDIGSRFEFISPPPMQDLPELPTRLGVDTLDRDRSIRRGSRDQRGYRTGGDDWSSGVRRSGGDDWSSGGRRSGGDDWSSGGRRSGGDDWSSGGRRSGGDDWSSGGRRSGGNDFLSGGRRSSGYSLSNRTSSPNRSSSPNRYSSPNGGACFNCGESGHRASECPSKRDLF 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi238g00021 622 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 123 298 IPR014001 -
Vivi238g00021 622 SMART c2hcfinal6 601 617 IPR001878 GO:0003676|GO:0008270
Vivi238g00021 622 Gene3D - 592 620 - -
Vivi238g00021 622 MobiDBLite consensus disorder prediction 1 20 - -
Vivi238g00021 622 ProSiteProfiles Zinc finger CCHC-type profile. 602 617 IPR001878 GO:0003676|GO:0008270
Vivi238g00021 622 SMART ultradead3 111 315 IPR014001 -
Vivi238g00021 622 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 327 479 IPR001650 -
Vivi238g00021 622 MobiDBLite consensus disorder prediction 461 601 - -
Vivi238g00021 622 CDD DEADc 103 299 - -
Vivi238g00021 622 CDD SF2_C_DEAD 312 441 - -
Vivi238g00021 622 Gene3D - 93 302 IPR027417 -
Vivi238g00021 622 SUPERFAMILY Retrovirus zinc finger-like domains 582 620 IPR036875 GO:0003676|GO:0008270
Vivi238g00021 622 MobiDBLite consensus disorder prediction 567 601 - -
Vivi238g00021 622 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 451 IPR027417 -
Vivi238g00021 622 Pfam DEAD/DEAH box helicase 116 287 IPR011545 GO:0003676|GO:0005524
Vivi238g00021 622 Pfam Helicase conserved C-terminal domain 324 432 IPR001650 -
Vivi238g00021 622 Gene3D - 315 473 IPR027417 -
Vivi238g00021 622 FunFam ATP-dependent RNA helicase RhlE 85 301 - -
Vivi238g00021 622 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 90 465 - -
Vivi238g00021 622 Pfam Zinc knuckle 601 617 IPR001878 GO:0003676|GO:0008270
Vivi238g00021 622 MobiDBLite consensus disorder prediction 479 501 - -
Vivi238g00021 622 SMART helicmild6 352 432 IPR001650 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi238g00021 118 454 Eukaryotic Initiation Factors Gene Family AT1G72730 36.070 2.49e-61 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi238g00021 - - tpra:123902197 841.262