Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi238g00001 ATGGGAAGACACTCTTGCTGCTACAAGCAGAAGCTTAGGAAGGGACTATGGTCACCAGAAGAAGATGAAAAATTACTAAGGCATATAACTAAATATGGCCATGGATGTTGGAGTTCTGTGCCTAAACAAGCAGGTTTGCAAAGATGTGGTAAGAGTTGCAGACTTAGATGGATTAATTACTTAAGACCTGATTTAAAAAGAGGAACATTTTCTCAAGATGAAGAGAATCTCATTGTTGAACTTCATGCTGTATTAGGCAATAGATGGTCTCAAATTGCGGCGCAATTGCCCGGGAGGACTGATAATGAAATAAAGAATTTATGGAACTCATGTTTGAAGAAGAAACTTCGGCAAAAAGGTATAGATCCTGTAACTCATAAGCCATTGTCTGAGGTTGAGAATAATGGAGAGGAGAATTCCAAGAGTCAAGAGAAAGTGCCGGGGTTAGTGTTATTATCCTCGAATGAACTGAACCTTTTGAAATCGGAGAGTTCTAAATCAGATGCGGGTTCTAGCTATGAGCAAAGAACATCGTCTTCAATTTCACCGAAAGATTATGCGCTAGAAATGGAAGGCTCTTGCAACAAGGATTTTTTTATTGACAGGTTCATGAGTTCGAACTCTCAGAATTTGGATTTGATGGGGAATTATCCGATTCAGATGAGTTACGCGAACAATGAGAATGATAGTAGTCATTGGTTTAACCAAACTGGAAAAACTTTCGATATGAAATATTCTGATCAGTTTCATTTCAATTCCGCTACAGCAGCAGCAGCAACAACTATGTTTCTTCCTAATTCGTTTTGCTGCAACAATTCGCTCGATATTCCTCAGTCTGAGAATGTTTCTACATCGACGATGAAAAGTGATAGCAATATGTTAAACTTGCAAAACAGCAATTTTTCTTGGGGAGGATTGATGGAAAATCATCATCATCATACAGAAGAAGCTAAGTGGGAGAATAATAATAATAATAATAATAATCATAATGAGTTCTTTCACAATCCGATTTTAATGTTGGCTTCTGAATCGTTATGCAATGAGATAAAGCCGCAAATGAATTTGGTACCTGATAATTTCGGGACTATTTTGCCTCATACAAAGCAAGAACAATCACATACACAAAATTCTAATATCTTTTCTAAGGATATTCAGAAACTCAGAGAAGCTTTCGGAGATATGTGA 1185 0.3705 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQDEENLIVELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSEVENNGEENSKSQEKVPGLVLLSSNELNLLKSESSKSDAGSSYEQRTSSSISPKDYALEMEGSCNKDFFIDRFMSSNSQNLDLMGNYPIQMSYANNENDSSHWFNQTGKTFDMKYSDQFHFNSATAAAATTMFLPNSFCCNNSLDIPQSENVSTSTMKSDSNMLNLQNSNFSWGGLMENHHHHTEEAKWENNNNNNNNHNEFFHNPILMLASESLCNEIKPQMNLVPDNFGTILPHTKQEQSHTQNSNIFSKDIQKLREAFGDM 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi238g00001 394 FunFam Myb transcription factor 11 67 - -
Vivi238g00001 394 Gene3D - 11 67 - -
Vivi238g00001 394 MobiDBLite consensus disorder prediction 162 181 - -
Vivi238g00001 394 MobiDBLite consensus disorder prediction 123 140 - -
Vivi238g00001 394 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vivi238g00001 394 PANTHER MYB DOMAIN PROTEIN 55 1 354 - -
Vivi238g00001 394 MobiDBLite consensus disorder prediction 123 147 - -
Vivi238g00001 394 FunFam MYB transcription factor 68 140 - -
Vivi238g00001 394 CDD SANT 17 61 IPR001005 -
Vivi238g00001 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi238g00001 394 Gene3D - 68 146 - -
Vivi238g00001 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vivi238g00001 394 SMART sant 66 114 IPR001005 -
Vivi238g00001 394 SMART sant 13 63 IPR001005 -
Vivi238g00001 394 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vivi238g00001 394 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi238g00001 394 CDD SANT 69 109 IPR001005 -
Vivi238g00001 394 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi238g00001 394 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi238g00001 1 155 MYB Transcription Factor Family AT4G01680 83.226 1.01e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi238g00001 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi238g00001 K09422 - gmx:100815881 474.552