Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi237g00003 ATGATCATGATGAATTCCTTCAACCTTCTATTCATGTTCTTCCTCACAACCTTTCTCCTTACCTCAACTATTAAAGCCACCCCAACTTTCCTCTACCAAGCTTGTTCACAAAACAAAACAAATACCAACAGCACCTACGAAACCAAACTCAAAACACTTTTCTCTTCACTATCTTCCAACGCCACCAACAAGGAATTCTACAACACCACAATCCATAGCAAAAACCCTTCAAACACAGCATACGGTCTTTTCATGTGCAGAGGCGACGTTTCATCTCCCATCTGCCAACAGTGCGTCGCAAACGCAACACAGACACTATCAACAAACTCAGACTGTTCCTTATCCAAACGAGCTGTTACCTGGTACGATGAGTGCATGGTTCGATATTCCAACACCTCTTTTTTCTCCACCGTCGCTACAAGGCCTGTTGTTTTCCTACTGAACACTGCGAATATCACGAACCAGGAAAGCTTTATGCGTTTGTTGTCTGTTACCATGAATGAATCAGCAGATAAAGCTGCGAATTCTTCTGTCGGTGCTAAGAAATATGCTACAAAGGAAGCTAGAATATCTGGATTTCAGACGCTGTACAGTTTGGCTCAGTGTACAGACGATTTATCTTCACAAGATTGCAGTTCTTGTCTTAGTGCTGCCATTGGATATCTTCCAGAATGCTGTGATGGAAAACAAGGAGGGAGAGTTTTATTTCCTAGCTGTAATATTAGGTATGAATTGTACCCTTTTTATACAAACATTACTCCGTCACCACCACCTTCAGCATCACCAGCGTCTTCGACACCACCAGGGAATCTTCCTGCATCAAACACTCCTAATTTAGGAGGTAGTAGTGGAATCTCATTAGGGACAATTGTTGCAATTGTGGTTCCAATTACAGTGGCTGCGCTGCTATTTATAGTAGGAATTTGTTTCTTTTGTATAAGAGGGTGGAAAAAGAAGCACGACTCTGCTGCAGCAGAGGATCCAAAAACTGAAACTGATATTACCACGGTGGAATCCTTGAGATTTGATTTGAGTACACTTGAAGAAGCCACCAACAAATTCTCCGAAGCTAATAAGCTAGGGGAAGGTGGATTTGGTGAGGTTTACAAGGGCGTGCTTCCGAGCGGACAACAAATAGCTGTCAAAAGACTCTCTAAACACTCGGGACAAGGCGGAGAACAATTTAAGAATGAAGTTGAACTGGTTGCACAGCTTCAACATAGAAATTTGGCTAGGCTTATGGGATTTTGCTTGGAAAGAGAAGAGAAGATACTTGTTTATGAATTCGTAACCAACAAAAGTCTTGACTATATTCTTTTTGATCCTGAAAAACAAAGGCTATTGGATTGGACAAGGCGTTACAAGATTATTGGAGGGATCGCTCGCGGCATTCAATATCTTCATGAAGATTCAAGGCTTAAAATAATTCATCGGGATCTCAAAGCTAGCAATGTATTGTTGGATAAAGATATGAATCCAAAAATCTCTGATTTTGGTTTGGCAAAGTTATTTGGAGTGGATCAAACTCAAGGAAATACAAGTAGGATTGTAGGGACATATGGTTACATGTCTCCGGAGTATGCAATGCATGGAGATTTCTCTATTAAGTCTGATGTATACAGTTTCGGAATCCTCGTTATGGAGATTATAAGTGGCAAGAAGAACAGCTCTTTCTATGAAACAGGTGTTGCTGAGGATTTAATTTCCTATGCGTGGAATCTTTGGAAGAATGGAACACCTTTGGAATTGGTAGATCACACAATAAGAGAATCCTATACTCCAAATGAAGCTATAAGATGCATCCATATTGGTTTATTATGTGTCCAAGAAGATCCAGACGATAGACCTACAATGGCAACAATAATACTTATGCTAGATAGTCACACTGTTACTCTACCGGTACCGAGGCAGCCTGCATTTTTTCTACAAAGTGGAGCTGATCAGCACATGCCAACAATACAGATTAGTCAATCTGATACCCGTTGA 1986 0.4074 MIMMNSFNLLFMFFLTTFLLTSTIKATPTFLYQACSQNKTNTNSTYETKLKTLFSSLSSNATNKEFYNTTIHSKNPSNTAYGLFMCRGDVSSPICQQCVANATQTLSTNSDCSLSKRAVTWYDECMVRYSNTSFFSTVATRPVVFLLNTANITNQESFMRLLSVTMNESADKAANSSVGAKKYATKEARISGFQTLYSLAQCTDDLSSQDCSSCLSAAIGYLPECCDGKQGGRVLFPSCNIRYELYPFYTNITPSPPPSASPASSTPPGNLPASNTPNLGGSSGISLGTIVAIVVPITVAALLFIVGICFFCIRGWKKKHDSAAAEDPKTETDITTVESLRFDLSTLEEATNKFSEANKLGEGGFGEVYKGVLPSGQQIAVKRLSKHSGQGGEQFKNEVELVAQLQHRNLARLMGFCLEREEKILVYEFVTNKSLDYILFDPEKQRLLDWTRRYKIIGGIARGIQYLHEDSRLKIIHRDLKASNVLLDKDMNPKISDFGLAKLFGVDQTQGNTSRIVGTYGYMSPEYAMHGDFSIKSDVYSFGILVMEIISGKKNSSFYETGVAEDLISYAWNLWKNGTPLELVDHTIRESYTPNEAIRCIHIGLLCVQEDPDDRPTMATIILMLDSHTVTLPVPRQPAFFLQSGADQHMPTIQISQSDTR 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi237g00003 661 Pfam Salt stress response/antifungal 151 246 IPR002902 -
Vivi237g00003 661 Pfam Salt stress response/antifungal 35 131 IPR002902 -
Vivi237g00003 661 Pfam Protein tyrosine and serine/threonine kinase 357 623 IPR001245 GO:0004672|GO:0006468
Vivi237g00003 661 SUPERFAMILY Protein kinase-like (PK-like) 339 646 IPR011009 -
Vivi237g00003 661 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 650 - -
Vivi237g00003 661 FunFam Cysteine-rich receptor-like protein kinase 10 316 429 - -
Vivi237g00003 661 Gene3D Phosphorylase Kinase; domain 1 316 429 - -
Vivi237g00003 661 CDD STKc_IRAK 360 626 - -
Vivi237g00003 661 MobiDBLite consensus disorder prediction 256 277 - -
Vivi237g00003 661 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 28 133 - -
Vivi237g00003 661 Gene3D - 141 248 IPR038408 -
Vivi237g00003 661 Gene3D - 27 134 IPR038408 -
Vivi237g00003 661 ProSiteProfiles Gnk2-homologous domain profile. 140 248 IPR002902 -
Vivi237g00003 661 FunFam cysteine-rich receptor-like protein kinase 10 430 632 - -
Vivi237g00003 661 ProSiteProfiles Protein kinase domain profile. 354 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi237g00003 661 FunFam Cysteine-rich receptor-like protein kinase 25 142 248 - -
Vivi237g00003 661 Gene3D Transferase(Phosphotransferase) domain 1 430 632 - -
Vivi237g00003 661 ProSitePatterns Protein kinases ATP-binding region signature. 360 382 IPR017441 GO:0005524
Vivi237g00003 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Vivi237g00003 661 ProSiteProfiles Gnk2-homologous domain profile. 28 134 IPR002902 -
Vivi237g00003 661 SMART serkin_6 354 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi237g00003 10 659 Receptor kinase-like Gene Family AT4G05200 55.909 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi237g00003 PK_Tyr_Ser-Thr 6.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi237g00003 - - mtr:25485264 1039.64