Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi237g00002 ATGCTCTCTTCGCGTTGCCTTCTGTTTTTACTTCTTCCTCTCTTTTTCACACTACACACTCAAGCCAACGACCAAATAATTTTCCGCTATTCCGAATGTAACAATGATCTCGGAAACTTCACCGACGGTAGTACCTACCAAAACAACCTCGCCGCCGTTCTAAAAATCATATATTCCAACAGAGAAATAGACTATGGGTTCTACAATTTCTCATACGGCGATGAACCTGACAAAGTAAACGCAATCGGATTCTGCAGAGGAGACATTAATCCAAACGATTGCCGCGACTGCTTGAAAACCTCCGCAGTACTTCTCACAGATCGGTGTGGAATACAAAAAGAGGCAATTGGTTACTACGACATATGCACCTTACGCTATTCAAACGATTCAATTTTCGGTGTCATGGATACTGATACTGCTAAATATTACAACATCGAAAGCAAAACAGTGGTGGATGATGCATTTAACCAAACAATAAGTGGCTTGTTAGATGAACTTAAAAGCGCAGCGGCGGAAGGTGATTCACGGAAAAAGTTTGGTGAAAAGAGTGTTAAAGTAAATGAACTGAATACTAACAATGAGACTATATATGGGTTGGTTCAGTGTACTCCAGATTTAACAAAACAAAATTGTACTAGATGTTTGGATTCAGCTTACGGTGATCTTTCAAGGTGGTGTCCAGAAATGAAAGGTTGTTTGTATCTTGGACCAAGCTGTTCAGTTAGATACGATATAGTTCAGTTTTATGAGTCCATAGTTAACAATACAGAGTCACCAGCACCACAACCTTCTTCCCAAGCAATTTCTCCTAAACCTTCTTCATCAGTTAACTCTACCACTACCACTACAGGAAAGAAGAGGAAATTAAGAACGGCCATCGCTATTGTTTTATCATGTGTTGTAGCTGGCATGCTAGTTGTTGGTGGATGTATTTATTGTAAAAGGAGAGGGCCAAAACCCGAATATAGGGCTGAAATTGAAGTACAAGAGACATATGAAGATGAAGATGAAGATGAAGTTAGAGCTGGTAATGATCTTAAAGTTGGTGATTTGTTGCAATTTGACTTTGAAACCATCAAATTAGCTACAAGCAACTTTTCTGATGAAAATGCGCTTGGTCAAGGTGGATTTGGAACTGTTTATAAGGGTACACTCGATGGACTTGATGTTGCTATCAAAAGATTGGCTAACAATTCTAAGCAAGGAGAAACAGAATTCAAGAATGAAGTATTACTTACGGGGAAGCTTCAACATCGAAATTTGGTTAAACTACTAGGTTTTTGTTTACAAAGAGGAGAAAGATTGCTAATATACGAGTTTGTCCCCAATAAAAGTCTCGACTATATCATATTTGATCCAATCAAACGTGGGAATTTAAATTGGGAAAGACGCTTCAAAATTATTAAAGATATTGCCCGCGGTCTTCTTTATCTTCACGAAGATTCTCGACTACAAATTGTTCACCGTGATCTCAAAACAAGTAATATTCTACTTGATAATGAAATGAATCCTAAAATTACAGATTTTGGCATTGCAAAGTTATTTGCACCCAATCAAACCCATGGCATGACAAGTACAGTTATTGGAACTTACGGATATATGGCTCCGGAGTATATCAAACATGGAGAATTTTCAATCAAATCTGATGTATTCAGTTTTGGTGTAATTATATTGGAAATTGTATGCGGTCGAAGAAACACTAAGTTTCGAGATGGGGAGAATATAAAAGATCTATTAGACAATGCATGGGAAAATTGGAAGACAGGGACAAGTTTAGATATTGTAGATCCAATGTTAGACCAAAGTTTTAATAAGAATGAAAAGATGAGATGCATTCATGTTGGATTACTGTGTGTTCAAGAAGATGTAGATGTGAGACCAACTATGAGTTCTGTTTTACTAATGCTTAGTAGCACATCTTTCCCACTTCCAGAACCTTCAGAACCTCCATTTTTAATGCAGCCCAAAAGAGCATTATCTATATCATTAAGTGACCAATATTCAGGTCCTACAAGGTCAAGTGATTCAGGATCAGGAAGTCAATTTACTCAAGGATCAACAACTAAGTCCTCAGTTACAGATCAATAA 2088 0.3745 MLSSRCLLFLLLPLFFTLHTQANDQIIFRYSECNNDLGNFTDGSTYQNNLAAVLKIIYSNREIDYGFYNFSYGDEPDKVNAIGFCRGDINPNDCRDCLKTSAVLLTDRCGIQKEAIGYYDICTLRYSNDSIFGVMDTDTAKYYNIESKTVVDDAFNQTISGLLDELKSAAAEGDSRKKFGEKSVKVNELNTNNETIYGLVQCTPDLTKQNCTRCLDSAYGDLSRWCPEMKGCLYLGPSCSVRYDIVQFYESIVNNTESPAPQPSSQAISPKPSSSVNSTTTTTGKKRKLRTAIAIVLSCVVAGMLVVGGCIYCKRRGPKPEYRAEIEVQETYEDEDEDEVRAGNDLKVGDLLQFDFETIKLATSNFSDENALGQGGFGTVYKGTLDGLDVAIKRLANNSKQGETEFKNEVLLTGKLQHRNLVKLLGFCLQRGERLLIYEFVPNKSLDYIIFDPIKRGNLNWERRFKIIKDIARGLLYLHEDSRLQIVHRDLKTSNILLDNEMNPKITDFGIAKLFAPNQTHGMTSTVIGTYGYMAPEYIKHGEFSIKSDVFSFGVIILEIVCGRRNTKFRDGENIKDLLDNAWENWKTGTSLDIVDPMLDQSFNKNEKMRCIHVGLLCVQEDVDVRPTMSSVLLMLSSTSFPLPEPSEPPFLMQPKRALSISLSDQYSGPTRSSDSGSGSQFTQGSTTKSSVTDQ 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi237g00002 695 ProSiteProfiles Gnk2-homologous domain profile. 137 248 IPR002902 -
Vivi237g00002 695 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 26 131 - -
Vivi237g00002 695 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 687 - -
Vivi237g00002 695 Gene3D Transferase(Phosphotransferase) domain 1 441 641 - -
Vivi237g00002 695 MobiDBLite consensus disorder prediction 663 695 - -
Vivi237g00002 695 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Vivi237g00002 695 Gene3D Phosphorylase Kinase; domain 1 327 440 - -
Vivi237g00002 695 FunFam cysteine-rich receptor-like protein kinase 10 441 643 - -
Vivi237g00002 695 Gene3D - 138 248 IPR038408 -
Vivi237g00002 695 Gene3D - 25 130 IPR038408 -
Vivi237g00002 695 CDD STKc_IRAK 372 636 - -
Vivi237g00002 695 Pfam Protein kinase domain 367 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi237g00002 695 SUPERFAMILY Protein kinase-like (PK-like) 351 672 IPR011009 -
Vivi237g00002 695 Pfam Salt stress response/antifungal 33 128 IPR002902 -
Vivi237g00002 695 Pfam Salt stress response/antifungal 152 244 IPR002902 -
Vivi237g00002 695 ProSitePatterns Protein kinases ATP-binding region signature. 372 393 IPR017441 GO:0005524
Vivi237g00002 695 SMART serkin_6 366 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi237g00002 695 FunFam Cysteine-rich receptor-like protein kinase 10 327 440 - -
Vivi237g00002 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Vivi237g00002 695 FunFam Cysteine-rich receptor-like protein kinase 10 139 248 - -
Vivi237g00002 695 MobiDBLite consensus disorder prediction 257 283 - -
Vivi237g00002 695 ProSiteProfiles Protein kinase domain profile. 366 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi237g00002 36 683 Receptor kinase-like Gene Family AT4G21410 44.140 3.59e-179 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi237g00002 Pkinase 9.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi237g00002 - - tpra:123882259 997.653