Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi237g00001 ATGCTCTCTTCGCGTTGCCTTCTGTTTTTACTTCTTCCTCTCTTTTTCACACTACACACTCAAGCCAACGACCAAATAATTTTCCGCTATTCCGAATGTAACAATGATCTCGGAAACTTCACCGACGGTAGTACCTACCAAAACAACCTCGCCGCCGTTCTAAAAATCATATATTCCAACAGAGAAATAGACTATGGGTTCTACAATTTCTCATACGGCGATGAACCTGACAAAGTAAACGCAATCGGATTCTGCAGAGGAGACATTAATCCAAACGATTGCCGCGACTGCTTGAAAACCTCCGCAGTACTTCTCACAGATCGGTGTGGAATACAAAAAGAGGCAATTGGTTACTACGACATATGCACCTTACGCTATTCAAACGATTCAATTTTCGGTGTCATGGATACTGATACTGCTAAATATTACAACATCGAAAGCAAAACAGTGGTGGATGATGCATTTAACCAAACAATAAGTGGCTTGTTAGATGAACTTAAAAGCGCAGCGGCGGAAGGTGATTCACGGAAAAAGTTTGGTGAAAAGAGTGTTAAAGTAAATGAACTGAATACTAACAATGAGACTATATATGGGTTGGTTCAGTGTACTCCAGATTTAACAAAACAAAATTGTACTAGATGTTTGGATTCAGCTTACGGTGATCTTTCAAGGTGGTGTCCAGAAATGAAAGGTTGTTTGTATCTTGGACCAAGCTGTTCAGTTAGATACGATATAGTTCAGTTTTATGAGTCCATAGTTAACAATACAGAGTCACCAGCACCACAACCTTCTTCCCAAGCAATTTCTCCTAAACCTTCTTCATCAGTTAACTCTACCACTACCACTACAGGAAAGAAGAGGAAATTAAGAACGGCCATCGCTATTGTTTTATCATGTGTTGTAGCTGGCATGCTAGTTGTTGGTGGATGTATTTATTGTAAAAGGAGAGGGCCAAAACCCGAATATAGGGCTGAAATTGAAGGTATACTACAAGAGACATATGAAGATGAAGATGAAGATGAAGTTAGAGCTGGTAATGATCTTAAAGTTGGTGATTTGTTGCAATTTGACTTTGAAACCATCAAATTAGCTACAAGCAACTTTTCTGATGAAAATGCGCTTGGTCAAGGTGGATTTGGAACTGTTTATAAGGGTACACTCGATGGACTTGATGTTGCTATCAAAAGATTGGCTAACAATTCTAAGCAAGGAGAAACAGAATTCAAGAATGAAGTATTACTTACGGGGAAGCTTCAACATCGAAATTTGGTTAAACTACTAGGTTTTTGTTTACAAAGAGGAGAAAGATTGCTAATATACGAGTTTGTCCCCAATAAAAGTCTCGACTATATCATATTTGATCCAATCAAACGTGGGAATTTAAATTGGGAAAGACGCTTCAAAATTATTAAAGATATTGCCCGCGGTCTTCTTTATCTTCACGAAGATTCTCGACTACAAATTGTTCACCGTGATCTCAAAACAAGTAATATTCTACTTGATAATGAAATGAATCCTAAAATTACAGATTTTGGCATTGCAAAGTTATTTGCACCCAATCAAACCCATGGCATGACAAGTACAGTTATTGGAACTTACGGATATATGGCTCCGGAGTATATCAAACATGGAGAATTTTCAATCAAATCTGATGTATTCAGTTTTGGTGTAATTATATTGGAAATTGTATGCGGTCGAAGAAACACTAAGTTTCGAGATGGGGAGAATATAAAAGATCTATTAGACAATGCATGGGAAAATTGGAAGACAGGGACAAGTTTAGATATTGTAGATCCAATGTTAGACCAAAGTTTTAATAAGAATGAAAAGATGAGATGCATTCATGTTGGATTACTGTGTGTTCAAGAAGATGTAGATGTGAGACCAACTATGAGTTCTGTTTTACTAATGCTTAGTAGCACATCTTTCCCACTTCCAGAACCTTCAGAACCTCCATTTTTAATGCAGCCCAAAAGAGCATTATCTATATCATTAAGTGACCAATATTCAGGTCCTACAAGGTCAAGTGATTCAGGATCAGGAAGTCAATTTACTCAAGGATCAACAACTAAGTCCTCAGTTACAGATCAATAA 2094 0.3744 MLSSRCLLFLLLPLFFTLHTQANDQIIFRYSECNNDLGNFTDGSTYQNNLAAVLKIIYSNREIDYGFYNFSYGDEPDKVNAIGFCRGDINPNDCRDCLKTSAVLLTDRCGIQKEAIGYYDICTLRYSNDSIFGVMDTDTAKYYNIESKTVVDDAFNQTISGLLDELKSAAAEGDSRKKFGEKSVKVNELNTNNETIYGLVQCTPDLTKQNCTRCLDSAYGDLSRWCPEMKGCLYLGPSCSVRYDIVQFYESIVNNTESPAPQPSSQAISPKPSSSVNSTTTTTGKKRKLRTAIAIVLSCVVAGMLVVGGCIYCKRRGPKPEYRAEIEGILQETYEDEDEDEVRAGNDLKVGDLLQFDFETIKLATSNFSDENALGQGGFGTVYKGTLDGLDVAIKRLANNSKQGETEFKNEVLLTGKLQHRNLVKLLGFCLQRGERLLIYEFVPNKSLDYIIFDPIKRGNLNWERRFKIIKDIARGLLYLHEDSRLQIVHRDLKTSNILLDNEMNPKITDFGIAKLFAPNQTHGMTSTVIGTYGYMAPEYIKHGEFSIKSDVFSFGVIILEIVCGRRNTKFRDGENIKDLLDNAWENWKTGTSLDIVDPMLDQSFNKNEKMRCIHVGLLCVQEDVDVRPTMSSVLLMLSSTSFPLPEPSEPPFLMQPKRALSISLSDQYSGPTRSSDSGSGSQFTQGSTTKSSVTDQ 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi237g00001 697 ProSiteProfiles Gnk2-homologous domain profile. 137 248 IPR002902 -
Vivi237g00001 697 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 26 131 - -
Vivi237g00001 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 488 500 IPR008271 GO:0004672|GO:0006468
Vivi237g00001 697 FunFam cysteine-rich receptor-like protein kinase 10 443 645 - -
Vivi237g00001 697 Pfam Salt stress response/antifungal 33 128 IPR002902 -
Vivi237g00001 697 Pfam Salt stress response/antifungal 152 244 IPR002902 -
Vivi237g00001 697 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Vivi237g00001 697 Gene3D - 138 248 IPR038408 -
Vivi237g00001 697 Gene3D - 25 130 IPR038408 -
Vivi237g00001 697 SUPERFAMILY Protein kinase-like (PK-like) 353 674 IPR011009 -
Vivi237g00001 697 CDD STKc_IRAK 374 638 - -
Vivi237g00001 697 Gene3D Transferase(Phosphotransferase) domain 1 443 643 - -
Vivi237g00001 697 FunFam Cysteine-rich receptor-like protein kinase 10 331 442 - -
Vivi237g00001 697 Gene3D Phosphorylase Kinase; domain 1 331 442 - -
Vivi237g00001 697 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 689 - -
Vivi237g00001 697 ProSitePatterns Protein kinases ATP-binding region signature. 374 395 IPR017441 GO:0005524
Vivi237g00001 697 FunFam Cysteine-rich receptor-like protein kinase 10 139 248 - -
Vivi237g00001 697 MobiDBLite consensus disorder prediction 257 283 - -
Vivi237g00001 697 ProSiteProfiles Protein kinase domain profile. 368 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi237g00001 697 Pfam Protein kinase domain 369 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi237g00001 697 MobiDBLite consensus disorder prediction 665 697 - -
Vivi237g00001 697 SMART serkin_6 368 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi237g00001 36 685 Receptor kinase-like Gene Family AT4G21410 44.225 6.04e-179 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi237g00001 Pkinase 9.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi237g00001 - - tpra:123882259 996.112