Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi235g00041 ATGAGAACAAAAAGCGTCAGCGTTGGCCGCCGGCGTAGCATTACGCCTTCCGTGACTCCCTCCGCCTCTCCCATTCCTCTCCTCTCCACCGCCCAGGACAACCACAACGCGACCGTCTACGACAGCGACAGCACCGGCAATCACACACATGCCGCAGCACTTCCCAATTTCGTTCCCGATTCCGAACCACCAGATTCCCTAGACGATAACAGTTGCATTACCTGCAACCGAGCCGGAGGACCGTTGCTAGTATGTACCCAAACCGATTGCCCCGTTGTAGTCCACGTCACCTGCATCGGTTCCGAACCTAAGTTTGATGATTCTGGAAACTTCTTCTGTCCGTATTGCTCCTACAAGCGAGCGTTGAAGAGAACTAGAGAATTAAGAGAAAAAGCCATTCTAGCGAAGAAAGCTCTTTCGAGCTTTTTGGAAAAAGGCCAAACAGTGCGTAAGGATGATGATGAAGAAGAAGAACACATTGCTGAACCAGAACCGGTTCAACCAGTTCGGGATGAACCAAACAGTAATGAACCAGAACCGGTTCAGGGTGAACCAAACCGGAATGAACCAGAACCGGTTCAACCGGTTCAAGATGAACCGGATGTTTCTGATTCTGAGGAAAGAAGAGAACTAAATTGTAATGAAAATGATAAAGTTGAAGATAAAGGAAAGGTTTCTGTTTCAGGTAGTTCAGTCAGTGAAGCTAAAAATTCCGACTCGAATTCTGTCTCGGTGAAGAAAGGTCAGGCCAATGCCAATGCCAAAGGCAAACGCAAGGTTGCTTATGTGAAAAAATCATTGCTACCGGAACGAAAAACTGGTGGTGCTGGTGGTGGTAGTGGCGATGGTGATGGCGTGGATGAGGAGGAAGTTACCAGCTCTAGAACTTTTAGTGTGCAAAGGTCGAAGCAGAATTTGATAACTGGAAAACGTAGGAGATTGCTTTGGACCGATGAAGAAGAAAAAGCTCTCAAGGAAGGAGTGTTGAAGTATTCAACTGAAAAGCAGAATATCCCTTGGAGGAAAATTTTAGAATTTGGCTGTCGTGTGTTTGATAAGACTCGGACTCCTGTTGATCTCAAGGATAAATGGAAGAACATTATCTCCAAAGAAGGATACAAGTAG 1125 0.4631 MRTKSVSVGRRRSITPSVTPSASPIPLLSTAQDNHNATVYDSDSTGNHTHAAALPNFVPDSEPPDSLDDNSCITCNRAGGPLLVCTQTDCPVVVHVTCIGSEPKFDDSGNFFCPYCSYKRALKRTRELREKAILAKKALSSFLEKGQTVRKDDDEEEEHIAEPEPVQPVRDEPNSNEPEPVQGEPNRNEPEPVQPVQDEPDVSDSEERRELNCNENDKVEDKGKVSVSGSSVSEAKNSDSNSVSVKKGQANANAKGKRKVAYVKKSLLPERKTGGAGGGSGDGDGVDEEEVTSSRTFSVQRSKQNLITGKRRRLLWTDEEEKALKEGVLKYSTEKQNIPWRKILEFGCRVFDKTRTPVDLKDKWKNIISKEGYK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi235g00041 374 ProSiteProfiles Zinc finger PHD-type profile. 69 119 IPR019787 -
Vivi235g00041 374 Pfam Myb-like DNA-binding domain 316 367 IPR001005 -
Vivi235g00041 374 MobiDBLite consensus disorder prediction 1 27 - -
Vivi235g00041 374 MobiDBLite consensus disorder prediction 201 224 - -
Vivi235g00041 374 SUPERFAMILY FYVE/PHD zinc finger 61 124 IPR011011 -
Vivi235g00041 374 ProSiteProfiles Myb-like domain profile. 308 368 IPR001005 -
Vivi235g00041 374 CDD PHD_SF 71 116 - -
Vivi235g00041 374 ProSitePatterns Zinc finger PHD-type signature. 72 116 IPR019786 -
Vivi235g00041 374 MobiDBLite consensus disorder prediction 146 166 - -
Vivi235g00041 374 MobiDBLite consensus disorder prediction 144 303 - -
Vivi235g00041 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 159 IPR013083 -
Vivi235g00041 374 MobiDBLite consensus disorder prediction 226 249 - -
Vivi235g00041 374 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 31 371 - -
Vivi235g00041 374 SMART PHD_3 71 117 IPR001965 -
Vivi235g00041 374 CDD SANT_TRF 316 368 - -
Vivi235g00041 374 Gene3D - 306 369 - -
Vivi235g00041 374 MobiDBLite consensus disorder prediction 8 27 - -
Vivi235g00041 374 SMART sant 312 370 IPR001005 -
Vivi235g00041 374 SUPERFAMILY Homeodomain-like 311 368 IPR009057 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi235g00041 316 367 Single Myb Histone (SMH) Gene Family AT5G67580 56.364 3.97e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi235g00041 Myb_DNA-binding 9.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi235g00041 - - vvo:131655918 631.713