Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi235g00040 ATGAGAACAAAAAGCGTCAGCGTTGGCCGCCGGCGTAGCATTACGCCTTCCGTGACTCCCTCCGCCTCTCCCATTCCTCTCCTCTCCACCGCCCAGGACAACCACAACGCGACCGTCTACGACAGCGACAGCACCGGCAATCACACACATGCCGCAGCACTTCCCAATTTCGTTCCCGATTCCGAACCACCAGATTCCCTAGACGATAACAGTTGCATTACCTGCAACCGAGCCGGAGGACCGTTGCTAGTATGTACCCAAACCGATTGCCCCGTTGTAGTCCACGTCACCTGCATCGGTTCCGAACCTAAGTTTGATGATTCTGGAAACTTCTTCTGTCCGTATTGCTCCTACAAGCGAGCGTTGAAGAGAACTAGAGAATTAAGAGAAAAAGCCATTCTAGCGAAGAAAGCTCTTTCGAGCTTTTTGGAAAAAGGCCAAACAGTGCGTAAGGATGATGATGAAGAAGAAGAACACATTGCTGAACCAGAACCGGTTCAACCAGTTCGGGATGAACCAAACAGTAATGAACCAGAACCGGTTCAGGGTGAACCAAACCGGAATGAACCAGAACCGGTTCAACCGGTTCAAGATGAACCGGATGTTTCTGATTCTGAGGAAAGAAGAGAACTAAATTGTAATGAAAATGATAAAGTTGAAGATAAAGGAAAGGTTTCTGTTTCAGGTAGTTCAGTCAGTGAAGCTAAAAATTCCGACTCGAATTCTGTCTCGGTGAAGAAAGGTCAGGCCAATGCCAATGCCAAAGGCAAACGCAAGGTTGCTTATGTGAAAAAATCATTGCTACCGGAACGAAAAACTGGTGGTGCTGGTGGTGGTAGTGGCGATGGTGATGGCGTGGATGAGGAGGAAGTTACCAGCTCTAGAACTTTTAGTGTGCAAAGGCAAGTGTCGAAGCAGAATTTGATAACTGGAAAACGTAGGAGATTGCTTTGGACCGATGAAGAAGAAAAAGCTCTCAAGGAAGGAGTGTTGAAGTATTCAACTGAAAAGCAGAATATCCCTTGGAGGAAAATTTTAGAATTTGGCTGTCGTGTGTTTGATAAGACTCGGACTCCTGTTGATCTCAAGGATAAATGGAAGAACATTATCTCCAAAGAAGGATACAAGTAG 1131 0.4633 MRTKSVSVGRRRSITPSVTPSASPIPLLSTAQDNHNATVYDSDSTGNHTHAAALPNFVPDSEPPDSLDDNSCITCNRAGGPLLVCTQTDCPVVVHVTCIGSEPKFDDSGNFFCPYCSYKRALKRTRELREKAILAKKALSSFLEKGQTVRKDDDEEEEHIAEPEPVQPVRDEPNSNEPEPVQGEPNRNEPEPVQPVQDEPDVSDSEERRELNCNENDKVEDKGKVSVSGSSVSEAKNSDSNSVSVKKGQANANAKGKRKVAYVKKSLLPERKTGGAGGGSGDGDGVDEEEVTSSRTFSVQRQVSKQNLITGKRRRLLWTDEEEKALKEGVLKYSTEKQNIPWRKILEFGCRVFDKTRTPVDLKDKWKNIISKEGYK 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi235g00040 376 SMART sant 314 372 IPR001005 -
Vivi235g00040 376 ProSiteProfiles Zinc finger PHD-type profile. 69 119 IPR019787 -
Vivi235g00040 376 Gene3D - 308 371 - -
Vivi235g00040 376 MobiDBLite consensus disorder prediction 1 27 - -
Vivi235g00040 376 MobiDBLite consensus disorder prediction 201 224 - -
Vivi235g00040 376 CDD SANT_TRF 318 370 - -
Vivi235g00040 376 SUPERFAMILY FYVE/PHD zinc finger 61 124 IPR011011 -
Vivi235g00040 376 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 31 373 - -
Vivi235g00040 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 159 IPR013083 -
Vivi235g00040 376 CDD PHD_SF 71 116 - -
Vivi235g00040 376 ProSitePatterns Zinc finger PHD-type signature. 72 116 IPR019786 -
Vivi235g00040 376 MobiDBLite consensus disorder prediction 146 166 - -
Vivi235g00040 376 MobiDBLite consensus disorder prediction 226 249 - -
Vivi235g00040 376 SMART PHD_3 71 117 IPR001965 -
Vivi235g00040 376 MobiDBLite consensus disorder prediction 144 299 - -
Vivi235g00040 376 ProSiteProfiles Myb-like domain profile. 310 370 IPR001005 -
Vivi235g00040 376 MobiDBLite consensus disorder prediction 8 27 - -
Vivi235g00040 376 Pfam Myb-like DNA-binding domain 318 369 IPR001005 -
Vivi235g00040 376 SUPERFAMILY Homeodomain-like 313 370 IPR009057 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi235g00040 318 369 Single Myb Histone (SMH) Gene Family AT5G67580 56.364 4.12e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi235g00040 Myb_DNA-binding 9.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi235g00040 - - vvo:131655918 640.188