Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi235g00019 ATGGACAAAGAAGGTGTTGAACCTCAAACTGATGCAGCTTCAATGATCACAGATTCTTCTCTTCTTCATCACCAGGTTTCAAGAAGACCTAGTCTTTCCTCTTTACAGATACCAACAAGGTCACTAGAAAGTGCATTATCTTCTTCTACTAAGACAGATGGTCCTACATTATCAAGTCCGGGTTCCACTAGAGGACTGCCACCAAGGCCACATTCTACCAAAGTCAAATCCTCTATGAGAAATTTGCTTTCTGATAGGAGCTTTAGGACAAAAACTTGTTCACAAGATTCTGAAAAGACGGTTTTGATTGTTCCCGATACTTTATCATCAGATGGTCCTTTGGATAAGCCTTCTACTTCGAGATCGCTTTCACTTAACAAGATTTGGACAAAAGCTGCACATTCATTACCGGTTACTCCAATTGCAAATTCAGATGCAGCTAATGTAAATGGAAGACATGTCGAGGGCGATTCTGATTTGAATAAGGTGAAAGTGAATAAGCATATGACTCGATCATTTTCAGTTCCGGTTAATGTTAAAGCAGCTAATTTAAGGCCTACAGATTCGAGGCGCCTGGTTCGTGTAATTTCAGCAAGACCACATACAGCAACTACCGATGGCATTTCAACTCGCAGTGATTCAATGCAAGAGATTGTCATTGAAGATGCTTCTGAGGATATTCCAGAAGAAGAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTACGGAAGGGGGAGATACTCTTAGGATGGACTGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAATAAGACATGTGATGTATGCAAGCAGGATGTCCGGAACCTTCCAGTAACACTCTTAAAAATTCCTAATCCTCCAACTGTTGTTCGACGTCCATTGAATGCATCGCAGCAGAGAGAAGTAGCTAATTACAGGATCTGGCAGGATGTACCGGTACTTGTCTTGGTCAGTACGCTTGCCTACTTTTGCTTTCTCGAGGAACTACTGGTTTCGGATTTGGGTCCACGTGCTCTCGCCATTTCTTTGCCTTTCTCCTGCATTTTAGGTCTCCTTTCATCTCTAATTGCTTCAAGCATGGTGAGCCGGAGTTACATATGGGCTTATGCATGTTTCCAGTTTGCATTTGTCATTCTGTTTGCTCATGTATTCTATTCAATACTTAATGTTGCTGCAATATTCTCGGTTCTTCTTTCAACATTCACCGGATTCGGGATTTCAATCAGCGTGAATTCTCTCTTAATGGAATATATTAGATGGAAAACAAGTAGACAGATTCAATCTTCTAATCAAAATATCATTTCTAGACAGCAGCAGCAGCACCACCAAGAACATCAACAGCACCAATGA 1386 0.4134 MDKEGVEPQTDAASMITDSSLLHHQVSRRPSLSSLQIPTRSLESALSSSTKTDGPTLSSPGSTRGLPPRPHSTKVKSSMRNLLSDRSFRTKTCSQDSEKTVLIVPDTLSSDGPLDKPSTSRSLSLNKIWTKAAHSLPVTPIANSDAANVNGRHVEGDSDLNKVKVNKHMTRSFSVPVNVKAANLRPTDSRRLVRVISARPHTATTDGISTRSDSMQEIVIEDASEDIPEEEAVCRICLVELTEGGDTLRMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLPVTLLKIPNPPTVVRRPLNASQQREVANYRIWQDVPVLVLVSTLAYFCFLEELLVSDLGPRALAISLPFSCILGLLSSLIASSMVSRSYIWAYACFQFAFVILFAHVFYSILNVAAIFSVLLSTFTGFGISISVNSLLMEYIRWKTSRQIQSSNQNIISRQQQQHHQEHQQHQ 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi235g00019 461 ProSiteProfiles Zinc finger RING-CH-type profile. 226 288 IPR011016 GO:0008270
Vivi235g00019 461 SMART ringv_2 233 282 IPR011016 GO:0008270
Vivi235g00019 461 SUPERFAMILY RING/U-box 230 285 - -
Vivi235g00019 461 MobiDBLite consensus disorder prediction 12 66 - -
Vivi235g00019 461 PANTHER OS02G0165000 PROTEIN 24 452 - -
Vivi235g00019 461 MobiDBLite consensus disorder prediction 74 91 - -
Vivi235g00019 461 Pfam RING-variant domain 234 281 IPR011016 GO:0008270
Vivi235g00019 461 MobiDBLite consensus disorder prediction 1 91 - -
Vivi235g00019 461 CDD RING_CH-C4HC3_MARCH 234 282 - -
Vivi235g00019 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 289 IPR013083 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi235g00019 228 288 C3H Transcription Factor Family AT2G37950 48.387 8.03e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi235g00019 - - gmx:100779396 602.053