Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi235g00011 ATGGCGCGGCTCCTCGCGAAGCTGACGCTAATCGCATTCGCTCTAACATTCCTCTTCTCTCCGTCGCATTCCGCCGTGTTCAGCATAGATCTCGGCTCCGAATCGCTCAAGGTAACGGTGGTTAACCTAAAACCAGGCCAGACTCCGATCTCAGTCGCGATCAACGAGATGTCGAAACGGAAATCACCGGTGTTAGTTTCATTCCACGACAGAGATCGACTCCTCGGCGAGGAAGCAGCGGGTCTAGTCGCGCGGTATCCGCAACAAGTTTATTCTCAAATGAGAGACCTAATCGGGAAGCCCTACGCTTCTGCTAAGAAGTTTCTAGATTCGTTGTATTTACCGTTCGAGGCGAAGGAGGATTCTACAAGAGGCACTGTGAATTTCGTGGTGGATAAAAACGGTACCGAGTATTCGCCTGAGGAATTGGTTGCTATGGTTTTGAGTCATGCCGCGAATTTGGCTGAGTTTCATTCGAAGATTCCGATCAAGGATGCGGTGATTGCTGTTCCGCCTTATTTTGGACAAGCCGAAAGGAAGGGATTGCTTCAGGCTGCGGAGTTGGCCGGGATTAATGTTCTTTCGTTGATTAATGAGCATTCTGGTGCGGCTTTGCAGTATGGGATTGATAAGGATTTCTCAAACGAGTCGAGGCATGTTGTTTTCTATGATATGGGTTCTAGCAGTACCTATGCTGCGCTTGTGTATTTCTCATCTTATAAAAGTAAAGAGTATGGGAAGACAGTTTCGGTGAATCAGTTTCAGGTCAAGGATGTCCGTTGGAACCCTGAGCTGGGTGGACAGCATATGGAGTTGCGACTGGTAGAGTATTTTGCTAATGAATTCAATGCACAAGTTGGTGGTGGAATAGATGTGAGAAAATTTCCTAAGGCTATGGCTAAGTTAAAGAAACAGGTGAAGCGGACAAAAGAAATTCTCAGTGCAAACACGGGAGCTCCCATTTCTGTTGAGTCGCTTCACAATGATGTGGACTTCAGGAGCTCAATAACCCGTGAGAAGTTTGAAGAGCTCTGTGAAGATATTTGGGAGAAATCTCTTGTACCGTTGAAAGAGTTGCTTGAGCATTCAGGCTTGTCAGCAGATCAAATATATGCAGTGGAGTTAATTGGAGGTGCTACCAGAGTGCCGAAGTTACAGGCTAAGCTTCAAGAGTTCCTTGGTAGAAAAGAACTTGATAGGCATCTTGACGCTGATGAAGCAATAGTTCTTGGTGCTGCTCTCCATGCTGCAAATATAAGTGATGGTATCAAATTAAACCGAAAACTAGGTATGGTTGATGGTTCCTTATACGAGTTTGTGATTGAATTGAGTGGTGCCGATCTTCCGAAAAGTGAAAGTTCTAGGCAGTTACTTGTACCTAAAATGAAGAAACTCCCGAGTAAGATGTTCAGATCCATTGTTCATGACAAAGATTTTGAAGTTTCTCTAGCTTATGAAAGTGAACATCTTTTGCCACCTGGTGTTACCTCTCCCTTAATTGCTCAATACCAGATATCTGGTTTAACAGATGCAAGTGGGAGATATTCATCTCGGAATCTGTCGTCCCCCATTAAGGCAAATGTACATTTCTCTCTTAGTAGAAGTGGAGTTCTTTCTCTGGATCGGGCAGACGCTGTTGTTGAAATAACAGAGTGGGTGGAAGTTCCCCGGAAGAACTTGACCATAGAGAATTCAACTATTTCGTCAAATGTATCAGAGGAAACTGGTGCTAGTAACAATTCTGAGGAAAATAATGAAAGTGTGCAAAGTGATAGTGGTATTAATAAAACATCTAACACGAGTGCTGAAGAGCAAGCTGCTGCTGAACCTGCTACAGAGAAAAAGCTGAAAATGCGGACCTTTAGGGTACCATTAAAGATTGTTGAGAAGGTTACAGGAGCAGGGATGACTCTATCGAAAGATTTTCTTGCTGAAGCTAAAACAAAATTACAAGCACTAGACAAAAAAGATGCAGAAAGGAAAAGGACAGCCGAGTCTAAAAATAATTTAGAAGGATATATTTATACAACTAAGGAAAAGATTGAAACTCTTGAGGAGTTTGAAAAAGTTTCTACGAGTGAGGAACGCAAGTCCTTTGTTGAGAAGCTTGATGAGGTGCAAGATTGGTTATATACAGATGGTGAAGATGCCAACGCCACAGAGTTTGAAGAGCGTCTAGATCAGTTGAAAGCTGTTGGAGATCCAATTTTCTTCAGGCTAAAAGAGCTTACAGCTCGACCAGCAGCAGTTGAGCATGCCCGCAAATACATTAATGAGCTGAAACAGATTGTAGAAGAGTGGAAATCAAAGAAGTCTTGGCTTCCAAAAGAACGAGTAGACGAGGTGATTAATATTGCAGAAAAGTTAAAGAATTGGTTGGATGAGAAAGAAACTGAGCAAAAGAAAACTTCTGGATTCAGTAAGCCTGCATTTACATCTGAAGAAGTACATTTAAAGGTGTTTGAACTACAAAACAAGGTTGCCAGTATTAATAGAATCCCCAAGCCCAAGCCCAAGATTCAGAAGCCCCCAAAGAATGAAAGTGAGAGCAAGGAGCAGAATACTGTTGATTCTGATTCCACCTCAACTGATAGTTCCTCTCAAAGTGATGAATCTGCTAACCCGTCAAAAGGTGAAAGTGAAGAATCGGTTGACGAGCAACCTGAAAAGCACGATGAGCTATGA 2685 0.4291 MARLLAKLTLIAFALTFLFSPSHSAVFSIDLGSESLKVTVVNLKPGQTPISVAINEMSKRKSPVLVSFHDRDRLLGEEAAGLVARYPQQVYSQMRDLIGKPYASAKKFLDSLYLPFEAKEDSTRGTVNFVVDKNGTEYSPEELVAMVLSHAANLAEFHSKIPIKDAVIAVPPYFGQAERKGLLQAAELAGINVLSLINEHSGAALQYGIDKDFSNESRHVVFYDMGSSSTYAALVYFSSYKSKEYGKTVSVNQFQVKDVRWNPELGGQHMELRLVEYFANEFNAQVGGGIDVRKFPKAMAKLKKQVKRTKEILSANTGAPISVESLHNDVDFRSSITREKFEELCEDIWEKSLVPLKELLEHSGLSADQIYAVELIGGATRVPKLQAKLQEFLGRKELDRHLDADEAIVLGAALHAANISDGIKLNRKLGMVDGSLYEFVIELSGADLPKSESSRQLLVPKMKKLPSKMFRSIVHDKDFEVSLAYESEHLLPPGVTSPLIAQYQISGLTDASGRYSSRNLSSPIKANVHFSLSRSGVLSLDRADAVVEITEWVEVPRKNLTIENSTISSNVSEETGASNNSEENNESVQSDSGINKTSNTSAEEQAAAEPATEKKLKMRTFRVPLKIVEKVTGAGMTLSKDFLAEAKTKLQALDKKDAERKRTAESKNNLEGYIYTTKEKIETLEEFEKVSTSEERKSFVEKLDEVQDWLYTDGEDANATEFEERLDQLKAVGDPIFFRLKELTARPAAVEHARKYINELKQIVEEWKSKKSWLPKERVDEVINIAEKLKNWLDEKETEQKKTSGFSKPAFTSEEVHLKVFELQNKVASINRIPKPKPKIQKPPKNESESKEQNTVDSDSTSTDSSSQSDESANPSKGESEESVDEQPEKHDEL 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi235g00011 894 PRINTS 70kDa heat shock protein signature 402 422 - -
Vivi235g00011 894 PRINTS 70kDa heat shock protein signature 57 69 - -
Vivi235g00011 894 PRINTS 70kDa heat shock protein signature 25 38 - -
Vivi235g00011 894 PRINTS 70kDa heat shock protein signature 166 186 - -
Vivi235g00011 894 PRINTS 70kDa heat shock protein signature 370 386 - -
Vivi235g00011 894 CDD HYOU1-like_NBD 28 417 - -
Vivi235g00011 894 Gene3D Actin; Chain A, domain 4 266 351 - -
Vivi235g00011 894 MobiDBLite consensus disorder prediction 566 613 - -
Vivi235g00011 894 PANTHER HSC70CB, ISOFORM G-RELATED 24 870 - -
Vivi235g00011 894 Gene3D - 638 751 IPR029048 -
Vivi235g00011 894 Gene3D - 212 399 - -
Vivi235g00011 894 Gene3D - 92 146 - -
Vivi235g00011 894 SUPERFAMILY Actin-like ATPase domain 217 418 IPR043129 -
Vivi235g00011 894 MobiDBLite consensus disorder prediction 566 606 - -
Vivi235g00011 894 Pfam Hsp70 protein 27 738 IPR013126 GO:0005524|GO:0140662
Vivi235g00011 894 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 665 747 IPR029048 -
Vivi235g00011 894 ProSitePatterns Heat shock hsp70 proteins family signature 3. 373 387 IPR018181 -
Vivi235g00011 894 Gene3D - 28 417 - -
Vivi235g00011 894 FunFam Heat shock 70 kDa protein 4 266 351 - -
Vivi235g00011 894 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 427 628 IPR029047 -
Vivi235g00011 894 MobiDBLite consensus disorder prediction 830 894 - -
Vivi235g00011 894 MobiDBLite consensus disorder prediction 855 874 - -
Vivi235g00011 894 MobiDBLite consensus disorder prediction 875 894 - -
Vivi235g00011 894 SUPERFAMILY Actin-like ATPase domain 24 211 IPR043129 -
Vivi235g00011 894 Coils Coil 750 770 - -
Vivi235g00011 894 MobiDBLite consensus disorder prediction 840 854 - -
Vivi235g00011 894 FunFam Heat shock 70 kDa protein 4 638 750 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi235g00011 27 544 Calmodulin-binding Proteins AT3G12580 28.190 2.02e-60 216