Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi235g00001 ATGAATATAAGAAAGAATGATATGATGATGAGTAGTGTTCAACAAACTGCAAATTCTTCTCCTCCTCCTCCACATATGTATCCAGAAGAACTTCAACTTAAGCTTTATCAAGCTTTTATATTTTCAATTCCTATACTTTTTTCTATTATTCTTTTTCTTCTATTTTACTTGTTTTATCTCAAGAGAAGAGCTTCTTCTTTCTCTCCACACTTGCTTCCAAGGATTAATCCTCCAACTACCTATCGTTACTATTCATCTAATTCCTCACCTCGTCGTTTGGATTTTGCTGTGCAATTCTTGGAGAAACTTCCTAGAGTTTTGTTTGATGAGGATTTACAAGCAAGGGATTCAGTATGTTGTGTATGTTTGGGAGAATTTGAGTTGAAAGAAGAGTTGCAACAGATTCCATATTGCAAGCATGTGTTCCACATTGATTGCATACATCATTGGCTACAAACAAATTCAACTTGTCCACTTTGTAGATGTTCCATCATTCCCACTACTACCAAGTTCCTTGATCCACCACCTCCTATTAATGTTATTATATCAGACCCACCACATCAAGGTCCTATCAATTCTGATTCTCCATTACAAATTTCATCATTAGAAGATGAACCTGTTGGTGCTTCCACAACTGTTGTGTCAAGAGAATGA 654 0.3578 MNIRKNDMMMSSVQQTANSSPPPPHMYPEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSFSPHLLPRINPPTTYRYYSSNSSPRRLDFAVQFLEKLPRVLFDEDLQARDSVCCVCLGEFELKEELQQIPYCKHVFHIDCIHHWLQTNSTCPLCRCSIIPTTTKFLDPPPPINVIISDPPHQGPINSDSPLQISSLEDEPVGASTTVVSRE 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi235g00001 217 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 88 166 - -
Vivi235g00001 217 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Vivi235g00001 217 MobiDBLite consensus disorder prediction 1 20 - -
Vivi235g00001 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 166 IPR013083 -
Vivi235g00001 217 MobiDBLite consensus disorder prediction 183 217 - -
Vivi235g00001 217 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 13 172 - -
Vivi235g00001 217 MobiDBLite consensus disorder prediction 186 217 - -
Vivi235g00001 217 Pfam Ring finger domain 119 161 IPR001841 -
Vivi235g00001 217 SUPERFAMILY RING/U-box 97 168 - -
Vivi235g00001 217 CDD RING-H2_EL5-like 119 161 - -
Vivi235g00001 217 SMART ring_2 119 160 IPR001841 -
Vivi235g00001 217 MobiDBLite consensus disorder prediction 1 24 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi235g00001 18 166 C3H Transcription Factor Family AT4G10150 41.176 4.82e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi235g00001 K19039 - gmx:100794298 256.914