Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi234g00024 ATGAAGAGGTCTCCACCATCTTCAAGCTCTTCATCATCTTCAAGTTCTATTGGATTTGAGAATCCAATTCAATCAGAGAAAAAGAGGGGTGCTAGTAAGAGTGCAAAGAAGAATCTGAATGTGAAGCCACAGAACTTGAAGCAAAAGAGGAACCAAACAACAAATGGTGGAAGTAGAAGAAGCTCCATTTATAGAGGAGTTACAAGACATAGGTGGACTGGAAGATTTGAAGCTCATCTTTGGGATAAGAGTTCTTGGAACAACATTCAGAACAAGAAGGGAAAACAAGGTTATTTTACTATGGTTTTTTTTTTTCTTAGTATATTGTAACGTTCATAATCACTTGCGGATGGTTTAGTTTATTTGGGTGCTTATGATACTGAAGAAGCAGCAGCTCGTACCTATGATCTTGCAGCACTTAAGTATTGGGGAAAGGAAGCAACCTTGAATTTCCCGATAGAAAGTTATGGTAAAGAGTTTGAGGAAATGGACAAAGCATCCAAAGAAGAGTATTTGGCTTCATTGCGGCGCCAAAGCAGTGGTTTTTCAAGAGGCATTTCTAAATACCGTGGGGTTGCTAGGCATCACCACAATGGCCGGTGGGAAGCTCGCATTGGAAGAGTTTGTGGTAACAAGTATCTCTACTTGGGCACATACAAAACTCAAGAGGAAGCAGCAGTGGCATATGATATGGCAGCAATAGAGTACAGAGGAACAAATGCAGTGACAAATTTTGACATAAGCAACTACATTGACAAATTGAACAACAAGAAGAACAAAAATGCTGAAAAGACAGAACACACACAGCCACAAACAACAACAGAAATTGTTCCGAATAATTCCTCGGATTACGAAGAAACATCACAAGAACAAACACCAATAGCCACGCCGCCGCCACCACCACCAGAAGAAAATCCACAACAAACTGAATCTCTTCAACAAGTTCAACATCCGCAACAACAACAGCAGAATGTTGCTCCAATTGTTCAAGAACACACATTAGTCAACGTGATGGACATTTATCTCGACCAAGACCTACCCTGGAGCTACATGTACAACGGTTTATTAGAGTTTCAAGACACAAACATGTCATTCAGCAACGACGAAGATTTAACCGATATATTCGACGGAACAGGCTTTGTGGAAGACATCGGTCTAATGTTCAACACAGAAGAGCCTTGTGTTGGTGAAAGTGACATCAACATCAGTAAAGTTTTGGAGGGAATTGATTTATTAAATGGAAATGCTGAAAACATGGTTGTGGATAATAATGACAATAACAACATTAACAAGGAGTCCTTAGAATCATCTTCTTCACCATCATCTTCAACAACTACAGTTTCTTTGTAA 1350 0.3963 MKRSPPSSSSSSSSSSIGFENPIQSEKKRGASKSAKKNLNVKPQNLKQKRNQTTNGGSRRSSIYRGVTRHRWTGRFEAHLWDKSSWNNIQNKKGKQGYFTMVFFFLSILXRSXSLADGLVYLGAYDTEEAAARTYDLAALKYWGKEATLNFPIESYGKEFEEMDKASKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAVAYDMAAIEYRGTNAVTNFDISNYIDKLNNKKNKNAEKTEHTQPQTTTEIVPNNSSDYEETSQEQTPIATPPPPPPEENPQQTESLQQVQHPQQQQQNVAPIVQEHTLVNVMDIYLDQDLPWSYMYNGLLEFQDTNMSFSNDEDLTDIFDGTGFVEDIGLMFNTEEPCVGESDINISKVLEGIDLLNGNAENMVVDNNDNNNINKESLESSSSPSSSTTTVSL 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi234g00024 449 PRINTS Ethylene responsive element binding protein signature 134 154 IPR001471 GO:0003700|GO:0006355
Vivi234g00024 449 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Vivi234g00024 449 SUPERFAMILY DNA-binding domain 187 248 IPR016177 GO:0003677
Vivi234g00024 449 MobiDBLite consensus disorder prediction 266 292 - -
Vivi234g00024 449 SUPERFAMILY DNA-binding domain 119 153 IPR016177 GO:0003677
Vivi234g00024 449 Gene3D AP2/ERF domain 63 154 IPR036955 GO:0003700|GO:0006355
Vivi234g00024 449 Gene3D AP2/ERF domain 187 248 IPR036955 GO:0003700|GO:0006355
Vivi234g00024 449 MobiDBLite consensus disorder prediction 1 22 - -
Vivi234g00024 449 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 18 314 - -
Vivi234g00024 449 MobiDBLite consensus disorder prediction 1 64 - -
Vivi234g00024 449 ProSiteProfiles AP2/ERF domain profile. 188 246 IPR001471 GO:0003700|GO:0006355
Vivi234g00024 449 ProSiteProfiles AP2/ERF domain profile. 63 152 IPR001471 GO:0003700|GO:0006355
Vivi234g00024 449 MobiDBLite consensus disorder prediction 258 327 - -
Vivi234g00024 449 CDD AP2 62 153 IPR001471 GO:0003700|GO:0006355
Vivi234g00024 449 MobiDBLite consensus disorder prediction 307 327 - -
Vivi234g00024 449 MobiDBLite consensus disorder prediction 422 449 - -
Vivi234g00024 449 MobiDBLite consensus disorder prediction 37 62 - -
Vivi234g00024 449 FunFam AP2-like ethylene-responsive transcription factor 187 248 - -
Vivi234g00024 449 Pfam AP2 domain 187 238 IPR001471 GO:0003700|GO:0006355
Vivi234g00024 449 SMART rav1_2 188 252 IPR001471 GO:0003700|GO:0006355
Vivi234g00024 449 SMART rav1_2 63 158 IPR001471 GO:0003700|GO:0006355
Vivi234g00024 449 CDD AP2 187 248 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi234g00024 182 259 AP2-EREBP Transcription Factor Family AT5G57390 40.698 8.39e-12 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vivi234g00024 AP2 1.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi234g00024 - - vvo:131627159 780.785