Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi234g00020 ATGGGATATGGAACAAGAAAACTCTTAGATGAATATGAAGTTTCAGAGATTCTAGGTAGAGGTGGATTTTCAGTTGTTAGAAAAGGTACAAGAAAATCAAACAATGATGATGAAAAATCACAATCAGAATCAAAATCACAATCACAAGTAGTAGCAATCAAAACACTTAGAAGATTAGGTACTTCAAATAATATACCAAGGAAAAAAGAAGGTGGTGAAAAGAGCACACAAACCATGATGAACTTCCCTACAATGAGACAAGTTTCTGTCTCAGATGCATTACTAACAAATGAGATACTTGTAATGAGAAGAATAGTCGAAAACGTTTCGCCGCATCCGAACGTTATCGATCTTTACGATGTTTATGAAGACACAAATGGTGTTCATCTTGTGCTTGAGCTTTGTTCTGGTGGCGAGCTTTTCGATAGGATTGTTGCACAAGATAAGTATAGTGAGACTGAGGCTGCAACTGTGGTTCATCAGATTGTGGCAGGGTTAGAAGCTATTCATAAGGCTAACATTATTCATAGGGATTTGAAGCCTGAGAATTGTCTTTTTTTGGATGTTGGGAAAGATTCTAGTCTTAAGATTATGGATTTTGGATTGAGTTCTGTTGAAGAGTTTACTGATCCTGTTGTTGGTTTGTTTGGATCTATTGATTATGTTTCACCTGAGGCTCTTTCTCAAGGAAAGATTACTACTAAGAGTGATATGTGGTCTCTTGGAGTTATTCTATATATCTTACTTTCCGGGTATCCACCTTTCATTGCTCAAAATAATCGCCAAAAACAACAAATGATATTGAATGGAAATTTTAGTTTTTATGAGAAGACTTGGAAGGGAATTTCACAATCAGCAAAGAACTTGATTTCAAGTCTTCTAACTGTTGATCCTGATAAAAGACCTAGTGCTCAAGAGCTTCTAAGTGATCCATGGGTTAAAGGTGAGAAAGCCAAAGATGATCAAATGGACCCTGAAATTGTCTCAAGGCTACAAAGATTCAATGCAAGACGCAAACTTCGCGCAGCTGCAATTGCTAGTGTTTGGAGCTCCTCAATCTTCCTAAGAACTAAAAGATTGAGATCATTGGTTGGATCCTATGATCTCAAAGAAGATGAAATCGAAAATCTCAGGACACATTTCAAGAAAATATGTGCAGATAGAGACAATGCGACTCTTAGTGAGTTCGAGGAGGTGTTAAAAGCAATGAAAATGCCATCATTGATCCCTTTTGCAGCTCGAATATTTGATTTGTTTGACAACAACCGCGATGGAACGGTTGACATGAGAGAGATTCTTTGTGGCTTTTCGAGTCTCAAGAACTCCAAAGGAGAGGATGCTCTCCGCCTGTGCTTCCAGATGTATGACACAGATAGATCAGGATGCATCAGCAAGGAAGAAGTAGCATCTATGCTAAGAGCTTTGCCATATGATTGTCTTCCAACTGATATCACTGAGCCTGGAAAATTGGATGAGATTTTTGACTTAATGGATGCTAATAATGATGGAAAAGTTACATTTGATGAATTCAAAGCTGCTATGCAAAGAGATAGCTCTCTTCAAGATGTAGTTCTCTCTACTCTTCGACCATAG 1593 0.3779 MGYGTRKLLDEYEVSEILGRGGFSVVRKGTRKSNNDDEKSQSESKSQSQVVAIKTLRRLGTSNNIPRKKEGGEKSTQTMMNFPTMRQVSVSDALLTNEILVMRRIVENVSPHPNVIDLYDVYEDTNGVHLVLELCSGGELFDRIVAQDKYSETEAATVVHQIVAGLEAIHKANIIHRDLKPENCLFLDVGKDSSLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAQNNRQKQQMILNGNFSFYEKTWKGISQSAKNLISSLLTVDPDKRPSAQELLSDPWVKGEKAKDDQMDPEIVSRLQRFNARRKLRAAAIASVWSSSIFLRTKRLRSLVGSYDLKEDEIENLRTHFKKICADRDNATLSEFEEVLKAMKMPSLIPFAARIFDLFDNNRDGTVDMREILCGFSSLKNSKGEDALRLCFQMYDTDRSGCISKEEVASMLRALPYDCLPTDITEPGKLDEIFDLMDANNDGKVTFDEFKAAMQRDSSLQDVVLSTLRP 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi234g00020 530 SMART efh_1 411 439 IPR002048 GO:0005509
Vivi234g00020 530 SMART efh_1 489 517 IPR002048 GO:0005509
Vivi234g00020 530 SMART efh_1 447 475 IPR002048 GO:0005509
Vivi234g00020 530 ProSiteProfiles Protein kinase domain profile. 12 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi234g00020 530 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Vivi234g00020 530 ProSiteProfiles EF-hand calcium-binding domain profile. 407 442 IPR002048 GO:0005509
Vivi234g00020 530 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase 140 330 - -
Vivi234g00020 530 CDD EFh 448 515 IPR002048 GO:0005509
Vivi234g00020 530 Gene3D Transferase(Phosphotransferase) domain 1 142 356 - -
Vivi234g00020 530 SMART serkin_6 12 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi234g00020 530 ProSiteProfiles EF-hand calcium-binding domain profile. 485 520 IPR002048 GO:0005509
Vivi234g00020 530 CDD STKc_CAMK 12 312 - -
Vivi234g00020 530 Pfam EF hand 415 431 IPR002048 GO:0005509
Vivi234g00020 530 SUPERFAMILY EF-hand 357 522 IPR011992 -
Vivi234g00020 530 MobiDBLite consensus disorder prediction 27 49 - -
Vivi234g00020 530 Pfam Protein kinase domain 96 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi234g00020 530 Gene3D Phosphorylase Kinase; domain 1 5 141 - -
Vivi234g00020 530 Gene3D - 357 524 - -
Vivi234g00020 530 ProSitePatterns EF-hand calcium-binding domain. 498 510 IPR018247 -
Vivi234g00020 530 ProSitePatterns EF-hand calcium-binding domain. 456 468 IPR018247 -
Vivi234g00020 530 FunFam calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 356 525 - -
Vivi234g00020 530 ProSiteProfiles EF-hand calcium-binding domain profile. 443 478 IPR002048 GO:0005509
Vivi234g00020 530 Pfam EF-hand domain pair 446 515 IPR002048 GO:0005509
Vivi234g00020 530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Vivi234g00020 530 SUPERFAMILY Protein kinase-like (PK-like) 6 333 IPR011009 -
Vivi234g00020 530 FunFam Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase DMI-3 3 136 - -
Vivi234g00020 530 CDD EFh 414 473 IPR002048 GO:0005509
Vivi234g00020 530 PANTHER SERINE/THREONINE-PROTEIN KINASE 9 494 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi234g00020 94 518 EF-hand Containing Proteins AT3G10660 37.300 9.21e-80 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Vivi234g00020 Pkinase 4.9e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi234g00020 K13412 - gmx:732616 874.004