Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi234g00004 ATGTCAACCTCTTCAACATTCTTCATAATTCCCTTTCTCTCCCTTTTCCTTCTCTTACCTTTACTCCTTCAAGCTAATGAATCACCTTCTCCTTCTCCTTCTCCTTCTTCCTCCAATGCATGCAAATCAACACTATACCCTAAACTATGTCGTTCGATTCTCTCCTCGATCCGATCCTCTCCGACCGACCCCTACCACTTAGGAAAATTCTCAATAAAACAAAGCCTCAAACAAGCCAAAAAACTCTCAAAAGTATTCCAAGACTTCCTCCAAAAACACCACCAATCATCTTCCCTAAACCACGCTGAGTTCGCGGCACTAGACGATTGTCGCGAACTAAACCAACTCAATGTAGACTACCTAGAGTTAGTACAAGACGAACTAAAATCAGCTGATTCATCATCTTTCAATAACACTGATGTGTTGGTGGAAAAAGTTGAAACTTATCTTAGTGCTGTGGCTACAAACCATTATACTTGTTACGACGGTTTGGTTGTGACCAAAAGTAACATTGCTAATTCGTTTGCGGTTCCTTTGAGTAATGTTACGCAATTGTATAGTGTTTCACTTGGGTTGGCTATGCAGGCTTTGAATAGAAATATTAAGAAACGTAAGACTCGTAAACATGGTCTTCCTACTGAGACTTTTAAGGTTAGACAGCCACTTAAGAAGTTGATTAAGCTTCTTAGAACAAAATTCAGTTGCAACAAATCATCCAACTGTACCAGAACTGAAAGGATTCTTCAAGAAAGTGAAAACAAAGGAATTCTACTCAAAGAATTTGTTATTGTAAGCCTTGATGGAACAGAAAATTTTACTTCGATTGGAGAAGCTATTGATGCTACACCTGATAAATTAAAGCCAGAAGATGGCTATTTTCTTATCTATGTCAAACAAGGATTATATCAAGAATATATCACTATTCCGAAAAATAAGAAGAATATCTTACTTATTGGTGATGGTATTAACAAGACTTGCATCACAGGAAATCATAGTGTTGTTGATGGTTGGACAACTTTTAATTCTTCAACCTTTGCTGTGTCTGGAGAGAGATTTATAGCAATAGACATAACATTCAGAAACACGGCAGGACCAGAAAAGCACCAAGCAGTAGCAGTACGAAACAACGCGGATCTTTCAATATTTTACCGATGCAGTTTCGAAGGATACCAAGACACACTCTATGTTCACTCACTAAGACAATTCTATAGAGAATGCGACATCTATGGCACAGTTGATTTCATCTTCGGGAACGCGGCCGCAGTACTTCAAAGTTGTAACATCTACGCAAGAAAACCGATGCAAAATCAGAAAAACGCCATAACGGCACAAGGGCGAACTGATCCAAATCAAAACACAGGAATCTCAATACAAAACTGTAGGATTGATGCCGCGCCAGACTTAGCCGAAGATATGAATTCGACGAAGAATTATCTGGGAAGACCATGGAAAGTTTATTCAAGGACTGTTTATTTGCAGTCATATATTGGTGATTTGATTCAACCTTCTGGATGGTTAGAGTGGAATGGAACAGTTGGATTGGATACACTGTTTTATGGTGAGTTTGATAATCATGGACCTGGTTCTATGACTAATAATAGGGTTCAATGGCATGGTTATAATTTGTTGACTGCTAATCAAGCTTGGAATTTCACTGTCCTTAATTTTACTTTGGGAAATACTTGGCTTCCTGATACTGATGTACCTTACACTGAAGGATTAGATAATTGA 1731 0.383 MSTSSTFFIIPFLSLFLLLPLLLQANESPSPSPSPSSSNACKSTLYPKLCRSILSSIRSSPTDPYHLGKFSIKQSLKQAKKLSKVFQDFLQKHHQSSSLNHAEFAALDDCRELNQLNVDYLELVQDELKSADSSSFNNTDVLVEKVETYLSAVATNHYTCYDGLVVTKSNIANSFAVPLSNVTQLYSVSLGLAMQALNRNIKKRKTRKHGLPTETFKVRQPLKKLIKLLRTKFSCNKSSNCTRTERILQESENKGILLKEFVIVSLDGTENFTSIGEAIDATPDKLKPEDGYFLIYVKQGLYQEYITIPKNKKNILLIGDGINKTCITGNHSVVDGWTTFNSSTFAVSGERFIAIDITFRNTAGPEKHQAVAVRNNADLSIFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAVLQSCNIYARKPMQNQKNAITAQGRTDPNQNTGISIQNCRIDAAPDLAEDMNSTKNYLGRPWKVYSRTVYLQSYIGDLIQPSGWLEWNGTVGLDTLFYGEFDNHGPGSMTNNRVQWHGYNLLTANQAWNFTVLNFTLGNTWLPDTDVPYTEGLDN 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi234g00004 576 ProSitePatterns Pectinesterase signature 2. 408 417 IPR033131 -
Vivi234g00004 576 SUPERFAMILY Pectin lyase-like 259 573 IPR011050 -
Vivi234g00004 576 Pfam Plant invertase/pectin methylesterase inhibitor 39 191 IPR006501 GO:0004857
Vivi234g00004 576 PANTHER PECTINESTERASE 18 566 - -
Vivi234g00004 576 FunFam Pectinesterase 256 574 - -
Vivi234g00004 576 Pfam Pectinesterase 262 559 IPR000070 GO:0030599|GO:0042545
Vivi234g00004 576 CDD PMEI-like_3 40 192 - -
Vivi234g00004 576 SMART PMEI_2 32 192 IPR006501 GO:0004857
Vivi234g00004 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 192 IPR035513 -
Vivi234g00004 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 195 IPR035513 -
Vivi234g00004 576 Gene3D - 257 574 IPR012334 -
Vivi234g00004 576 NCBIfam pectinesterase inhibitor domain 13 192 IPR006501 GO:0004857
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi234g00004 40 574 Carbohydrate Esterase AT3G10720 61.255 0.0 686
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi234g00004 K01051 - gmx:100808277 883.248