Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi234g00003 ATGTCTAACTTTAAAGCCTATGGTAAAGTCGACGAAACCGACCAAGCCATATTCGAAGTTCGAAGGAGATCACGAAGGCGAATAACCATCATAAGCTTGTCCACAATTGTCCTCGTCGGTATTGTATTTGCAGCGGTTTTCGGAACCGTTGCTCACAATAATGCTCGTAACAATGACAACAACGACGACAACAATGATCAGTCTCTTTCGAGTGCAGTGAAGGCTATTTGTGATGTTACATTGTACAAGGATTCATGTGAGAGCACTCTTAGTCCTCTTGTTCATTCGGGTCAGCAAATTCGACCTGAGGAGTTGTTCAAGTTGTCAATACAAGTGGCATTGACCGCGGTTTCTAGAGGTGTTGAGTATTTCTCTGAGCATGGAGCTTTTGATGAGATGAACCTGAATTTGGACAATAGAACAAAGAAGGCTTTGCTGAATTGTAAAGATCTTTTGGACCTTGCTGTTGATCATTTGAATAGCTCCTTGGCTTATGGGGGAAAGTCTTCTTTGGTTGATGTTTTGGAGGACCTTGAAACATGGTTGAGTGCTTCAGGTACTTACCAGCAAACATGCATTGATGGTTTAGAAGAGGCAGAAGAAGCATTAAAATCAAATATTACAACCAATCTCAAAAACTCCACAGAACTCACAAGCAACAGTCTTGCCATCATCACATGGCTTAACAAGGCTGCATCGTCGGTAAACTTTAGACGGCGCTTACTTAGTTTATCTATCCAGAATGAGCCACCAAACTGGCTTCATCTTAATGATAGAAGAAAGCTACTTCAAGCAGACAATGATTTGAAGAAGAAAGCCGACATTGTTGTCGCGAGAGACGGGACTGGAAAATACAAAACTATTTCAGAAGCATTAAAACATGTAAGTGATAAAAGTGATAAGAGGACTGTGATCTATGTGAAGAAAGGGACTTATTATGAAAATGTTAGAGTGGAGAAAACTAAATGGAATGTCATGATTATTGGTGATGGTATGAATGTTACAACTGTTTCTGGTAGCCTTAATTTTGTGGATGGCACACCTACATTTTCATCAGCAACATTTGCTGTGTTTGGGAAGAATTTCATAGCTAGGGACATTGGTATCAAGAACACAGCAGGTCCAGAAAAACACCAAGCAGTAGCGCTAATGACAAGCGCGGATCAAGCAGTTTTCTACAAATGTTCCATTGATGCATATCAAGACACACTCTACGTCCACTCGAATCGTCAATTCTACCGAGAATGCAACATATACGGAACAGTCGATTTCATATTCGGAAACTCCGCTACCGTACTACAAAACTGCAACATTTTACCGAAAAAACCAATGCAAGGACAACAGAACACAATAACAGCACAAGGCAAAACTGATCCTAACATGAACACAGGACTTTCGATACAAAATTGCAATGTTTCGCCTTTCGGAGACTTGAGTTCTGTTCAAACATATTTAGGCAGGCCTTGGAAGAATTACTCAACAACAGTGTTTATGCAATCTAACTTGGGAAGTTTTATTAGTCCAAATGGATGGTTACCTTGGATCGGAGATTCTGCGCCGGATACTATATTCTATGCTGAATTTCAGAATGTTGGAGCTGGTGCTTCAACAAAGAATAGGGTCAAGTGGAAAGGTTTGAAAAGTATTACAAATAAACAAGCTAAAAAGTTTACTGTTAAGTCTTTTCTTAGTGGAGATAAATGGATTCCTGCTTCTGGTGCAACATTTAAATCTTCTCTGTAA 1743 0.3982 MSNFKAYGKVDETDQAIFEVRRRSRRRITIISLSTIVLVGIVFAAVFGTVAHNNARNNDNNDDNNDQSLSSAVKAICDVTLYKDSCESTLSPLVHSGQQIRPEELFKLSIQVALTAVSRGVEYFSEHGAFDEMNLNLDNRTKKALLNCKDLLDLAVDHLNSSLAYGGKSSLVDVLEDLETWLSASGTYQQTCIDGLEEAEEALKSNITTNLKNSTELTSNSLAIITWLNKAASSVNFRRRLLSLSIQNEPPNWLHLNDRRKLLQADNDLKKKADIVVARDGTGKYKTISEALKHVSDKSDKRTVIYVKKGTYYENVRVEKTKWNVMIIGDGMNVTTVSGSLNFVDGTPTFSSATFAVFGKNFIARDIGIKNTAGPEKHQAVALMTSADQAVFYKCSIDAYQDTLYVHSNRQFYRECNIYGTVDFIFGNSATVLQNCNILPKKPMQGQQNTITAQGKTDPNMNTGLSIQNCNVSPFGDLSSVQTYLGRPWKNYSTTVFMQSNLGSFISPNGWLPWIGDSAPDTIFYAEFQNVGAGASTKNRVKWKGLKSITNKQAKKFTVKSFLSGDKWIPASGATFKSSL 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi234g00003 580 CDD PMEI-like_3 75 230 - -
Vivi234g00003 580 ProSitePatterns Pectinesterase signature 2. 418 427 IPR033131 -
Vivi234g00003 580 SMART PMEI_2 68 224 IPR006501 GO:0004857
Vivi234g00003 580 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 71 228 IPR035513 -
Vivi234g00003 580 PANTHER PECTINESTERASE 37 570 - -
Vivi234g00003 580 Gene3D - 269 580 IPR012334 -
Vivi234g00003 580 NCBIfam pectinesterase inhibitor domain 57 228 IPR006501 GO:0004857
Vivi234g00003 580 FunFam Pectinesterase 69 229 - -
Vivi234g00003 580 SUPERFAMILY Pectin lyase-like 272 576 IPR011050 -
Vivi234g00003 580 Pfam Pectinesterase 274 566 IPR000070 GO:0030599|GO:0042545
Vivi234g00003 580 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 230 IPR035513 -
Vivi234g00003 580 FunFam Pectinesterase 268 580 - -
Vivi234g00003 580 Pfam Plant invertase/pectin methylesterase inhibitor 72 224 IPR006501 GO:0004857
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi234g00003 7 580 Carbohydrate Esterase AT3G10710 54.861 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi234g00003 - - gmx:100808802 874.389