Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi233g00052 ATGAAAATCTTTTCAATTATGGCATTTCTAACCACACTAATGTTACACTTGTTACTTCTTGTCCCAGCTTTCATACATTGTTCTCCAGTTCAAGATCCTGAATCAGTGGTCCAACAAGTCCAAAAGAGCATTATTGAGAATGAGAAGAGAAGAAAATTGGGTTATTATTCTTGTGGCACAAACAACCCAATTGATGATTGTTGGAGATGTGACCCCAGTTGGGAAAAAAATCGCAAACGTCTAGCCGAATGTGCTATCGGATTCGGTAGACATGCGATCGGAGGCAAAGATGGGAAATACTACATGGTCATTGACTCATCTGATGACCCTATAAATCCCAAGCCAGGAACATTAAGACATGCTGTTATCCAACAAGAGCCATTGTGGATCATTTTCAAACATGACATGGTGATTAATCTTAAAATGGATCTTCTCGTAAATTCTTACAAAACAATTGATGGTAGAGGAGCAAATGTACACATTGCTGAGGGACCGTGTATTAGAATACAACAAAAGACTAATATCATAATTCATGGTATACATATTCATCATTGCGTACGAGGTGGGAGTGGCTACGTGAGTGACTCGCCTAACCATCGTGTGATGAAAACTCGGTCGGATGGTGATGGGATTACGATCTTTGGTTCGGAACATATTTGGGTGGACCATTGTTCTTTGTCGAACTGTTTTGATGGTTTGATTGATGTTGTTCATGGATCAACGGGGGTTACTATTTCGAATAATTATATGACACATCATAACAAAGTTATGCTTTTTGGACATAGTGATTCTTATCAAGAGGATAAGAATATGCAAGCTACTATTGCTTTTAATCATTTTGGTGAAGGGCTTGGAGGAAGAATGCCAAGATGCAGATTTGGATACTTTCATGTGGTGAACAACGACTACACGCATTGGCAACAGTATGCAATAGGTGGAAGTTCGTCCCCCACTATTTTTAGTCAAGGCAATAGATTTCTAGCTCCAGATGATGATGATCACAAAGAGATTACAAAGCACTTTGACTCATCAGAGGGTGAATGGAAGAACTGGAATTGGAGGTCTGAAGGAGACCTAATGTTGAATGGAGCATACTTCACACCGTCGGGAGCAGGAGCATCGTCTTCGACTTACGCCAAAGCCTCGAGCATGGCGGCACGACCACCTATGCTTGTGGCTTCAATGACAGCAGGAGCTGGAGTTCTTAGTTGCAAAAAAGGTTACCAATGCTACTAG 1236 0.4094 MKIFSIMAFLTTLMLHLLLLVPAFIHCSPVQDPESVVQQVQKSIIENEKRRKLGYYSCGTNNPIDDCWRCDPSWEKNRKRLAECAIGFGRHAIGGKDGKYYMVIDSSDDPINPKPGTLRHAVIQQEPLWIIFKHDMVINLKMDLLVNSYKTIDGRGANVHIAEGPCIRIQQKTNIIIHGIHIHHCVRGGSGYVSDSPNHRVMKTRSDGDGITIFGSEHIWVDHCSLSNCFDGLIDVVHGSTGVTISNNYMTHHNKVMLFGHSDSYQEDKNMQATIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQQYAIGGSSSPTIFSQGNRFLAPDDDDHKEITKHFDSSEGEWKNWNWRSEGDLMLNGAYFTPSGAGASSSTYAKASSMAARPPMLVASMTAGAGVLSCKKGYQCY 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi233g00052 411 SMART amb_all 135 332 IPR002022 -
Vivi233g00052 411 Pfam Pectate lyase 144 326 IPR002022 -
Vivi233g00052 411 SUPERFAMILY Pectin lyase-like 37 404 IPR011050 -
Vivi233g00052 411 Gene3D - 61 403 IPR012334 -
Vivi233g00052 411 PANTHER PECTATE LYASE 18-RELATED 30 408 IPR045032 GO:0030570
Vivi233g00052 411 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Vivi233g00052 411 PRINTS Pollen allergen Amb family signature 143 159 IPR018082 -
Vivi233g00052 411 PRINTS Pollen allergen Amb family signature 309 328 IPR018082 -
Vivi233g00052 411 PRINTS Pollen allergen Amb family signature 351 375 IPR018082 -
Vivi233g00052 411 PRINTS Pollen allergen Amb family signature 84 101 IPR018082 -
Vivi233g00052 411 PRINTS Pollen allergen Amb family signature 207 228 IPR018082 -
Vivi233g00052 411 PRINTS Pollen allergen Amb family signature 381 404 IPR018082 -
Vivi233g00052 411 PRINTS Pollen allergen Amb family signature 107 132 IPR018082 -
Vivi233g00052 411 FunFam Pectate lyase 61 403 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi233g00052 12 410 Polysaccharide Lyase AT5G63180 67.581 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi233g00052 K01728 - gmx:100801136 687.952