Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi233g00047 ATGGCGAATGTAAGGTGGGGAGAATTGGAAGAAGACGACGGTGAAGATCTTGATTATCTTCTGTTACCTGCACGTCAGGTCATAGGTCCTGACGAAAATGGAATCAAGAGGGTTGTTGAGTACCGGTTCGATGATGATTATAATAAGGTTAAGATCACCACAACCACTCGCATTCGAAAACTCGCCAACGCGCGTCTCAGCAAATGCGCCGTCGAACGCCGTTCGTGGCCCAAGTTTGGAGATGCCGTTCGTGAAGACGTTGGTGCACGCCTCACTATGGTTTCCACGGAAGAAATCGTTCTCGAACGCCCCAAATCTCTTGGTTCCAGCAAGGAGGATGCAAAGAATAGTGACCCAGGTGCTGTTCTTATGGTATGCAGGACTTGTGGGAAGAAGGGTGATCATTGGACTGCAAGGTGTCCATATAAGTCTGATGAAAGCGTTGTTGATAAAACTCCAACAGATGAGACTAAGGATATATATGTACCCCCTCGCCTGAGATCTGATATTGACAGAACTATTGATTCAAACATGAGGCGGAGGAACGATGAGAATTCTGTTCGGGTAACCAACCTCTCGGAAGACACAAAGGAGGCTGATTTGTTTGAGCTTTTCAGGCCTTTTGGTGATGTGATCAGGGTCTATGTTGCTATAGATCAAAAGACTGGCATGAGTAGAGGCTTTGGCTTTGTTAACTTTCGCAGCAGGGAAGATGCTCAGAGGGCTATTAACAAACTCAACGGATATGGCTACGATAATCTCATTCTGAGACTTGAATGGGCCACCCCTAGAACAACCTAG 801 0.4657 MANVRWGELEEDDGEDLDYLLLPARQVIGPDENGIKRVVEYRFDDDYNKVKITTTTRIRKLANARLSKCAVERRSWPKFGDAVREDVGARLTMVSTEEIVLERPKSLGSSKEDAKNSDPGAVLMVCRTCGKKGDHWTARCPYKSDESVVDKTPTDETKDIYVPPRLRSDIDRTIDSNMRRRNDENSVRVTNLSEDTKEADLFELFRPFGDVIRVYVAIDQKTGMSRGFGFVNFRSREDAQRAINKLNGYGYDNLILRLEWATPRTT 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi233g00047 266 PIRSF Transl_init_eIF-3_RNA-bind 1 266 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vivi233g00047 266 CDD RRM_eIF3G_like 186 261 IPR034240 -
Vivi233g00047 266 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 17 262 - -
Vivi233g00047 266 SMART rrm1_1 186 259 IPR000504 GO:0003723
Vivi233g00047 266 Pfam Eukaryotic translation initiation factor 3 subunit G 26 144 IPR024675 -
Vivi233g00047 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 253 IPR000504 GO:0003723
Vivi233g00047 266 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 3 265 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vivi233g00047 266 FunFam Eukaryotic translation initiation factor 3 subunit G 150 266 - -
Vivi233g00047 266 CDD eIF3G 33 144 IPR024675 -
Vivi233g00047 266 Gene3D - 138 266 IPR012677 -
Vivi233g00047 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 263 IPR000504 GO:0003723
Vivi233g00047 266 SUPERFAMILY RNA-binding domain, RBD 169 265 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi233g00047 2 266 Eukaryotic Initiation Factors Gene Family AT3G11400 59.048 2.90e-123 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi233g00047 K03248 - gmx:100818725 395.971