Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi233g00041 ATGGGAGAAACCGGTATCAATGTTCCTTACCCACGATACTTAAACCCTACGGCTCAAGAGTTTACCCCCACAACAACAAACCCCATTCCCCTCTCCGTCGCCGTCGGTGTTCCCTATCCCTACCCTCACTTCGCCGTCACACCTCCGCCGCATCTCTCCACTTTACCCACCCGCTCCGTCCTCCTCAGTCCTGTCCCTCCCACTACTGAATCCGACCTCCGGAAAGATCTCCAGGCCTTCGGTGAAGTCAGAGCTATCCAAACGGACTCCTTCCGTTACGGTATCGTGACGGCACATTTCTATGACCTCAGACACGCACAGGCGGCGTTCACCGCCATTCGTACTCACCATGTCCACTGCGTTTCGTTTTTTAACCCAATGTCTCAGCCACAATTTCATCCCGCTCCACCACCTCCCCCGCCGGGGCTCGTCGCCGGTGTGCCACTCTGGGCTCACTATGTCTTTTCCGATATTCAGAATCAAGGAACCCTCGTCGTTTTCAACTTAGACGACGACGTTTCACCTGAAAAACTACGACAAGTTTTCGAGCCTTTTGGAGCCATAAAGGAAGTGAGGGAAATTCCAGGGAAGAAAAAGAGTCAAAGATTCGTCGAGTTTTTCGACATAAGAGATGCTGGCAAAGCCTTGAAAGAAATGAACGGAAAAGAAATTGAAGGAAAATCAATTGCTATTGAGTTTAGTAAACAAAGTGGTTATTATGGAAGAAGATTCTTCCATTCAACTAATCCAAATCCTAATGCCTATATCTCCAATAAGCCATTTCATTTCAACATTCCTCCTCCACCTCCCTCGCCCCGACGTCGTTTTGGCCCACCGCAATTCTCGCACAAGAATTTCGGGACTGGTTCAATGAGTTCAAATAGTTTGAATGGGGATGAAAATCATTTTTCCCCTAGGAGGAATTTTGGCAGGGAATTCATTGGAGAAAGACCATGGAATTGGAAGGGGAAGCAACCTTATAAGAATGAGGCTCGTTATATAATCAAAGAAGATGCCATTGTTGAATCCGATTCTAGAACTACTCTCATGATCAAAAACATACCCAACAAGTACAGTCAGAAGCTACTCTTGAACATGTTGGACAACCACTGTTTACGCTGCAACGAGCAGATAGGCGACGGCGATGACAAGCCTCTATCTTCCTATGACTTCGTATACCTTCCTATAGATTTCAAGAACAAGTGCAACGTTGGATACGGGTTCGTGAATATGACATCTCCGGAAGCTACTCTAAGGTTCTACAAGGCCTTCCAGCAACAACGTTGGGAGGTTTTTAACTCCAGAAAAATCTGTCATCTTACCTACGCTAGAGTTCAGGGTTTGGAAGCTTTGAAAGAGCATTTTAAGAACTCAAAGTTCCCGTGTGAGATGGAGCATTATCTGCCGGTGGTATTTTCACCGCCTCGAGATGGGAAGCAATTAACGGAGCCATTTCCAGTAGTGGGGAGCATGGTACGAATGGGTGCTGTAGATGATAAGATGGAGGGTAGAGATCATAGGGTGGTAGCAGGTAGTAGTGGTGGTGGCGGTGATGATGATGATAAATTAGATGTGAAGTGA 1581 0.4674 MGETGINVPYPRYLNPTAQEFTPTTTNPIPLSVAVGVPYPYPHFAVTPPPHLSTLPTRSVLLSPVPPTTESDLRKDLQAFGEVRAIQTDSFRYGIVTAHFYDLRHAQAAFTAIRTHHVHCVSFFNPMSQPQFHPAPPPPPPGLVAGVPLWAHYVFSDIQNQGTLVVFNLDDDVSPEKLRQVFEPFGAIKEVREIPGKKKSQRFVEFFDIRDAGKALKEMNGKEIEGKSIAIEFSKQSGYYGRRFFHSTNPNPNAYISNKPFHFNIPPPPPSPRRRFGPPQFSHKNFGTGSMSSNSLNGDENHFSPRRNFGREFIGERPWNWKGKQPYKNEARYIIKEDAIVESDSRTTLMIKNIPNKYSQKLLLNMLDNHCLRCNEQIGDGDDKPLSSYDFVYLPIDFKNKCNVGYGFVNMTSPEATLRFYKAFQQQRWEVFNSRKICHLTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGKQLTEPFPVVGSMVRMGAVDDKMEGRDHRVVAGSSGGGGDDDDKLDVK 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi233g00041 526 Gene3D - 156 236 IPR012677 -
Vivi233g00041 526 SMART rrm1_1 59 124 IPR000504 GO:0003723
Vivi233g00041 526 SMART rrm1_1 163 232 IPR000504 GO:0003723
Vivi233g00041 526 MobiDBLite consensus disorder prediction 500 526 - -
Vivi233g00041 526 PANTHER RNA RECOGNITION MOTIF-CONTAINING 337 470 - -
Vivi233g00041 526 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 229 IPR000504 GO:0003723
Vivi233g00041 526 Pfam RNA recognition motif 2 346 456 IPR007201 -
Vivi233g00041 526 CDD RRM3_EAR1_like 346 447 IPR034458 -
Vivi233g00041 526 SUPERFAMILY RNA-binding domain, RBD 163 425 IPR035979 GO:0003676
Vivi233g00041 526 FunFam Terminal EAR1-like 1 299 452 - -
Vivi233g00041 526 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 236 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi233g00041 164 236 Eukaryotic Initiation Factors Gene Family AT2G23350 40.789 3.49e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi233g00041 - - psat:127082995 933.324