Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi233g00040 ATGGGAAACAAAGGTGGTTTTTTCCGTTATGCAGATGGTGCTGACAAGTTGCTATTATTCTTTGGAACTTTGGGTTGTATTGGTGATGGTATTCAAACTCCACTCACTATGCTTGTTCTTGGTAGTTTGATTGATGATTATGCTCGTGGCGGTTCACAACATACTGTCTCCATTCAAACTATCAACAAGTATGCTCTAAAGTTAGTTGCTGTTGCCATTGGAGTTGCTGTATCTGCTTTTATCGTTGGAGTATGTTGGACAAGAACTGCAGAAAGACAAACTTCTCGAATGCGAATTGAATATCTTAAATCGATTCTTAGACAAGAAGTTGGTTTCTTTGACAAGCAAACTAACTCTTCCACGACTTTCCAAGTAATTGCCACCATAACTTCTGATGCTCAAACAATCCAAGACACCATGTCTGATAAGGTGCCTAGTTGTCTAGTTCACCTCTCTGCGTTTTTCTCTAGCTTTATAGTGGCACTCTTCCTCTCTTGGAGACTTGCAGTAGCTGCTTTTCCATTTTCAATTATGATGATCTTGCCAGCACTCATATTTGGGAATGCTATGAAAGAGCTGGGTGGTAAAATGAAGGACGCGTTCGGAGATGCTGGTAGCATAGCAGAACAAGCAATCTCGTCGGTTCGTACTGTTTATTCGTACGTAGGTGAGAAGCAAACACTAAAAAGGTTCAGTTCTGCTCTTGATACGTGTATGCAGCTTGGCATAAAGCAAGGTCAAACAAAGGGAGTGGTTATCGGAAGTTTCGGTTTGTTATATGCTACTTGGGCATTCCAATCTTGGGTTGGGAGTGTTCTTGTTAGAACAAAAGGAGAGAAAGGTGGCCATGTGTTTTGTGCTGAAATATGCATTATTTGGGGAGGATTGTCTTTGATGAGTGCACTACCAAATCTTGCTTCCATATTAGAGGCGACAATAGCCGCTACTCGGATTTTCGAGATGATTGATAGAAAGCCAGCCACAGACTCTACCAGAGGAAAAGGAAGGATTTTAAAACATACAAGAGGCGAGATTACATTTAAAGATGTTGAATTTTGTTACCCTTCAAGACCAGATACAATGATTCTCCAAGGACTCAATCTTAAAGTTCAGGCATGTAAAACCGTAGGCCTAGTTGGAGGAAGTGGTTCTGGTAAATCGACTATAATCTCGTTGCTTGAAAGATTCTATGATCCTACTCGTGGTGACATATTGCTTGATGGTTTTGATATAAAGAGACTACATCTTAAGTGGTTTAGATCCTTGATAGGATTGGTAAATCAAGAACCAATTCTCTTTGCAACATCTATAAGAGAGAACATTCTATTTGGAAAAGAAGGAGCTTCAATGGAAGATGTCATAACCGCAGCAAAAGCAGCTAATGCGCACGATTTCATTATTAAACTTCCTAATGGATTTGAAACTCAAGTAGGACAACTAGGAGCTCAATTATCTGGAGGACAAAAACAAAGGATTGCTATTGCAAGAGCTTTAATAAGAGATCCTAAAATCCTACTACTTGATGAAGCTACTAGTGCTTTGGATTCACAATCCGAAAAAGTAGTACAAGATGCACTTGACTTGGCTTCTAGAGGTAGAACAACAATCATCATAGCTCACCGGCTTTCCACAATTCGTAAGGCTGATTCAATTGTAGTTCTTCAATCAGGAAAGGTGGTTGAATGTGGTTCACACGATGAACTACTTCGACTAAACAATGGACAAGGTGGGATTTACACCAAAATGCTACTTTTGCAACAGACGAGTCAAAATGAAAATGCGCAGCATCAAATAAACAAGAGCCCTCTTGCAATGGAAAATCTAGCAAGTTCAAATTCAAGCTGGCAAAATACACCAGTTCATCACGCGTTTAGCTCTGCACAACCCTTTAGTCCCATATATTCAATCAGTGTTATAGGGTCTAGCTTTGATGATGACTACAGCAGTGAAAACTCGGAGAAACCTTACCGTTCAAACGTATCTTACTGGCGTTTACTACAAATGAATGCTCCTGAATGGAAGCATGCTTTGTTTGGATGTTTAGGTGCCATTGGTTCAGGACTATGCCAGCCATTTTATTCCTATTGCTTAGGAATAGTTGCTTCTGTCTACTTCGTAGATGATAACTCTTTCATCGAATCGCAAATCAGATTGTACTCGATTATCTTCTGCTGCATAGCCGCTGTAAACTTTGTATCAGGCATCATTCAACATTACAATTTTTCTATCATGGGAGAGCGTTTGCTTAAAAGGGTGCGAGAGAATTTGCTAGAGAAGGTGTTGACATTTGAGATAGGATGGTTTGATCAAGAGGAAAATTCAAGTGCAGCGATCTGCGCGCGTTTGGCAACTGAAGCCAACTTGGTTCGATCCCTCGTTGCAGAACGAATGTCGTTGTTAGTTCAGGTCTCCGTCACGGCTTCGCTCGCTTTTGTACTCGGTTTAATTGTTACATGGAGGGTAGCTATTGTCATGATTGCTATGCAGCCTTTGGTCATTGCGTGTCTCTATTCAAAAACCGTTCTCTTGAAGAGTATGTCAGGTAATGCAAAAAATGCTCAAAGAGATGCTAGTCAATTAGCAATGGAAGCTACAACAAATCACAGGACTATCGCGGCATTTTCGTCCGAGAAAAAGATATTAAATTTATTCAAAACTGCAATGGATGGACCCAAGAAGGAAAGCATCAAGCAATCATGGATTTCAGGTTCTATACTGTCTATGTCACAATTCATGACAACAGCATCTATAGCTTTGACTTTTTGGTATGGAGGCATATTATTAAACCATAAACTTGTAGAATCAAAGCATCTCTTGCAAGTTTTCCTCATTTTGATGGGAACTGGACGACAAATTGCCGATACCGGAAGCATGACTTCTGACATAGCTAAAAGTGGAAGAGCCATTAGTTCGGTATTTGCAATATTGGATAGAAAAACTCAGATTGAACCTGAAGATATTAGAAACAGAAAAATGAAAAAGACTATGAAGGGTGACATAAAACTGAAAGACGTGTTTTTCTCGTACCCTGCAAGGCCAGATCAAATGATTCTCAAAGGCCTAACTCTTGAGATTGAAGCTGGCAAAACAGTAGCATTAGTAGGACAGAGTGGATCAGGAAAATCCACCATCATTGGCTTAATTGAAAGATTTTATGACCCTTTTAAGGGATCCATATTCATAGACAATTGTGACATCAAGGAACTTCATTTGAAAAGTTTGAGATCACATATTGCACTGGTGAGTCAGGAGCCTACTCTCTTTGCAGGAACTATCCGCGATAACATTGTATACGGGAAGGAAAATGCATCAGAGGATGAAATAAGAAGGGCCGCGCGTCTTGCAAATGCTCATGACTTTATAAGTTCAATGAGAGAAGGGTATGATACATACTGTGGAGAAAGAGGAGTACAGCTATCAGGAGGCCAGAAGCAAAGGATAGCAATAGCTCGGGCAATGGTGAAGAACCCTTCGATACTTCTGCTAGACGAAGCAACAAGTGCTCTTGACAGTGTGTCTGAGAATCTAGTACAAGAAGCTTTGGAGAAAATGATGGTTGGAAGAACATGTGTAGTTATAGCGCACCGTTTATCAACAATACAAAGTGTTGATTCAATAGCTGTAGTTAAAAACGGGAAAGTGGTTGAACAAGGTTCTCACTCCCAGTTACTGAACAATAGATCAAAAAATGGGACTTATTACTCTTTAGTTAGGCTACAACAAAGTCACTCAAGTTGA 3738 0.4007 MGNKGGFFRYADGADKLLLFFGTLGCIGDGIQTPLTMLVLGSLIDDYARGGSQHTVSIQTINKYALKLVAVAIGVAVSAFIVGVCWTRTAERQTSRMRIEYLKSILRQEVGFFDKQTNSSTTFQVIATITSDAQTIQDTMSDKVPSCLVHLSAFFSSFIVALFLSWRLAVAAFPFSIMMILPALIFGNAMKELGGKMKDAFGDAGSIAEQAISSVRTVYSYVGEKQTLKRFSSALDTCMQLGIKQGQTKGVVIGSFGLLYATWAFQSWVGSVLVRTKGEKGGHVFCAEICIIWGGLSLMSALPNLASILEATIAATRIFEMIDRKPATDSTRGKGRILKHTRGEITFKDVEFCYPSRPDTMILQGLNLKVQACKTVGLVGGSGSGKSTIISLLERFYDPTRGDILLDGFDIKRLHLKWFRSLIGLVNQEPILFATSIRENILFGKEGASMEDVITAAKAANAHDFIIKLPNGFETQVGQLGAQLSGGQKQRIAIARALIRDPKILLLDEATSALDSQSEKVVQDALDLASRGRTTIIIAHRLSTIRKADSIVVLQSGKVVECGSHDELLRLNNGQGGIYTKMLLLQQTSQNENAQHQINKSPLAMENLASSNSSWQNTPVHHAFSSAQPFSPIYSISVIGSSFDDDYSSENSEKPYRSNVSYWRLLQMNAPEWKHALFGCLGAIGSGLCQPFYSYCLGIVASVYFVDDNSFIESQIRLYSIIFCCIAAVNFVSGIIQHYNFSIMGERLLKRVRENLLEKVLTFEIGWFDQEENSSAAICARLATEANLVRSLVAERMSLLVQVSVTASLAFVLGLIVTWRVAIVMIAMQPLVIACLYSKTVLLKSMSGNAKNAQRDASQLAMEATTNHRTIAAFSSEKKILNLFKTAMDGPKKESIKQSWISGSILSMSQFMTTASIALTFWYGGILLNHKLVESKHLLQVFLILMGTGRQIADTGSMTSDIAKSGRAISSVFAILDRKTQIEPEDIRNRKMKKTMKGDIKLKDVFFSYPARPDQMILKGLTLEIEAGKTVALVGQSGSGKSTIIGLIERFYDPFKGSIFIDNCDIKELHLKSLRSHIALVSQEPTLFAGTIRDNIVYGKENASEDEIRRAARLANAHDFISSMREGYDTYCGERGVQLSGGQKQRIAIARAMVKNPSILLLDEATSALDSVSENLVQEALEKMMVGRTCVVIAHRLSTIQSVDSIAVVKNGKVVEQGSHSQLLNNRSKNGTYYSLVRLQQSHSS 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi233g00040 1245 Gene3D ABC transporter type 1, transmembrane domain 653 978 IPR036640 GO:0005524|GO:0016020
Vivi233g00040 1245 Pfam ABC transporter 1018 1167 IPR003439 GO:0005524
Vivi233g00040 1245 SUPERFAMILY ABC transporter transmembrane region 7 326 IPR036640 GO:0005524|GO:0016020
Vivi233g00040 1245 Gene3D - 335 587 IPR027417 -
Vivi233g00040 1245 PANTHER ABC TRANSPORTER B FAMILY 7 585 IPR039421 -
Vivi233g00040 1245 SUPERFAMILY ABC transporter transmembrane region 664 983 IPR036640 GO:0005524|GO:0016020
Vivi233g00040 1245 SMART AAA_5 1027 1213 IPR003593 GO:0016887
Vivi233g00040 1245 SMART AAA_5 372 558 IPR003593 GO:0016887
Vivi233g00040 1245 ProSitePatterns ABC transporters family signature. 484 498 IPR017871 GO:0005524|GO:0016887
Vivi233g00040 1245 Gene3D ABC transporter type 1, transmembrane domain 7 621 IPR036640 GO:0005524|GO:0016020
Vivi233g00040 1245 Coils Coil 843 863 - -
Vivi233g00040 1245 CDD ABC_6TM_Pgp_ABCB1_D2_like 666 982 - -
Vivi233g00040 1245 ProSitePatterns ABC transporters family signature. 1139 1153 IPR017871 GO:0005524|GO:0016887
Vivi233g00040 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 677 964 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi233g00040 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 310 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi233g00040 1245 FunFam ABC transporter B family member 4 335 595 - -
Vivi233g00040 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 345 581 IPR003439 GO:0005524
Vivi233g00040 1245 Pfam ABC transporter transmembrane region 20 276 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi233g00040 1245 Pfam ABC transporter transmembrane region 678 943 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi233g00040 1245 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 318 - -
Vivi233g00040 1245 FunFam ABC transporter B family member 4 990 1244 - -
Vivi233g00040 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1000 1236 IPR003439 GO:0005524
Vivi233g00040 1245 CDD ABC_MTABC3_MDL1_MDL2 345 586 - -
Vivi233g00040 1245 Pfam ABC transporter 363 512 IPR003439 GO:0005524
Vivi233g00040 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 585 IPR027417 -
Vivi233g00040 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 992 1240 IPR027417 -
Vivi233g00040 1245 Gene3D - 985 1244 IPR027417 -
Vivi233g00040 1245 CDD ABC_MTABC3_MDL1_MDL2 1000 1240 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi233g00040 7 1241 Calmodulin-binding Proteins AT2G36910 44.212 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi233g00040 K05658 - gmx:100804664 1985.3